PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G15980.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 675aa    MW: 73376.5 Da    PI: 7.9447
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G15980.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33277333259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkkkvers+ d++++ei+Y+g+Hnh+
  OMERI08G15980.2 277 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKKKVERSQ-DGQITEIVYKGSHNHP 333
                      8****************************************.***************7 PP
2WRKY105.52.9e-33488546159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  OMERI08G15980.2 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 546
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29272335IPR003657WRKY domain
SuperFamilySSF1182902.09E-26274335IPR003657WRKY domain
SMARTSM007745.3E-37276334IPR003657WRKY domain
PROSITE profilePS5081123.146277335IPR003657WRKY domain
PfamPF031062.2E-25277333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37473548IPR003657WRKY domain
SuperFamilySSF1182904.45E-29480548IPR003657WRKY domain
PROSITE profilePS5081137.597483548IPR003657WRKY domain
SMARTSM007741.7E-38488547IPR003657WRKY domain
PfamPF031062.7E-25489546IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDGTNNHGAL MDDWMLPSPS PRTLMSSFLN EEFSYCPFSD IFGDNGSNKH QDGLGKSKAF  60
IDSSREETAQ LAKKFESNLF GANQKSSSNG CLSERMAART GFGVLKIDTS RVGYSTPIRS  120
PVTIPPGVSP RELLESPVFL PNAIAQPSPT TGKLPFLMHS NVKPSIPKKT EDETRHDRVF  180
FFQPILGSKP PTCPVAEKGF SVNHQNQPSV TDNHQELSLQ SSSTAAKDFT SATIVKPKTS  240
DSMLDNDDHP SPANDQEENA TNKNEEYSSD LIITPAEDGY NWRKYGQKQV KNSEHPRSYY  300
KCTFTNCAVK KKVERSQDGQ ITEIVYKGSH NHPLPPSNRR PNVPFSHFND LRDVHSEKFG  360
SKSGQATATS WENAANGHLQ DVGSEVLTKL SASLTTTEHA EKSVMDKQEA VDISSTLSNE  420
EDDRVTHRAP LSLGFDANDD DVEHKRRKMD VYAATSTSTN AIDIGAVASR AVREPRVVVQ  480
TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCS VRKHVERSSH DLKSVITTYE  540
GKHNHEVPAA RNSGHPSSGS AAAPQSTNGL LHRRPEPAQG GGGGSLAQFG YGSAGHRPAE  600
QFGAAAAGFS FGMLPRSIAT PAPSPAIAVP AMQGYPGLVL PRGEMKVSLL PQSGNAGAAA  660
SQQLMGRLPK QHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36277549878Probable WRKY transcription factor 4
2lex_A2e-36277549878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0EN190.0A0A0E0EN19_9ORYZ; Uncharacterized protein
STRINGOMERI08G15650.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-117WRKY DNA-binding protein 2