PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G14870.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 276aa MW: 28710.8 Da PI: 7.7658

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G14870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.5	1.3e-37	58	116	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss OMERI08G14870.1 58 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 116 5678**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	59	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	60	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-31	61	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MQEQQPETGR RPAQQFATVD LRRPKGYAAA PATPQPGSAA AAAAAAGPAA TAAAAAGEGD 60 PCPRCESRDT KFCYYNNYNT SQPRHFCKCC RRYWTKGGTL RNVPVGGGTR KKSSSSSSSS 120 SSSSAAAAAA PAAKRQKTSK KRRVTTPEPA AAAVTTPVLT EAAADSSAKT TTEATSEKKT 180 TTSTTTTPPA PDTASEITTE LVVPAVEDSF TDLLQPDSAA VTLGLDFSDY PSITKSLADP 240 DLHFEWPPPA FDMASYWPAG AGFADPDPTA VFLNLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241364	0.0	AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence.
GenBank	AP004620	0.0	AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650493.1	1e-143	dof zinc finger protein MNB1A
Swissprot	P38564	5e-68	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0E0EML4	0.0	A0A0E0EML4_9ORYZ; Uncharacterized protein
STRING	OMERI08G14580.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-28	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]