PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G13000.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 309aa MW: 33628.3 Da PI: 5.6294

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G13000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.3	2.5e-39	7	146	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k........kvka.......eekewyfFskrdkkyatgkrknrat 78 lp+GfrF Ptdeelv++yL++k+ + +++ +i++vd+y+++Pw+Lp k + + + e+yfF++r++ky++g r +rat OMERI08G13000.1 7 LPAGFRFFPTDEELVTYYLARKAMDATFTS-AAIRDVDLYSSDPWHLPfKctgessaaS--TggggdggGGGECYFFCRRSSKYPSGARVRRAT 97 799**********************999.78***********54777776651..1444443345599**************** PP NAM 79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdW 121 + gyWk+tgkdk v+++ +g lvg+kktLvfy rap+gekt+W OMERI08G13000.1 98 AGGYWKSTGKDKGVYAAvggvggGGGLVGTKKTLVFYGWRAPRGEKTSW 146 ************98888887788******99******** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-42	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	37.781	7	180	IPR003441	NAC domain
Pfam	PF02365	2.7E-20	8	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEEEQRLPAG FRFFPTDEEL VTYYLARKAM DATFTSAAIR DVDLYSSDPW HLPFKCTGES 60 SAASTGGGGD GGGGGECYFF CRRSSKYPSG ARVRRATAGG YWKSTGKDKG VYAAVGGVGG 120 GGGLVGTKKT LVFYGWRAPR GEKTSWSEWV ICRVFMKKPP IDHWLEMEQE VETTTTVQEH 180 TPNRRHLLPA PTPPPPPSCP PWQHTSRRSG DGRAAIDGGN REEDEHGLAR EESSPVVISS 240 LSRCTSPSSL LLNHEHLGAS SSDDLPELME FGDIYGGITA GGPTDQQASS SNSNSICNLL 300 DEPYYCWNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-31	7	158	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-31	7	158	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-31	7	158	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-31	7	158	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-31	7	158	20	169	NAC domain-containing protein 19
3swm_B	5e-31	7	158	20	169	NAC domain-containing protein 19
3swm_C	5e-31	7	158	20	169	NAC domain-containing protein 19
3swm_D	5e-31	7	158	20	169	NAC domain-containing protein 19
3swp_A	5e-31	7	158	20	169	NAC domain-containing protein 19
3swp_B	5e-31	7	158	20	169	NAC domain-containing protein 19
3swp_C	5e-31	7	158	20	169	NAC domain-containing protein 19
3swp_D	5e-31	7	158	20	169	NAC domain-containing protein 19
4dul_A	5e-31	7	158	17	166	NAC domain-containing protein 19
4dul_B	5e-31	7	158	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	1e-179	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	1e-179	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650320.1	1e-134	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FLJ2	2e-43	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0ELV8	0.0	A0A0E0ELV8_9ORYZ; Uncharacterized protein
STRING	OMERI08G12700.1	1e-175	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-32	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]