PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G03660.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 363aa    MW: 37667.5 Da    PI: 7.2688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G03660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-1087112127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  OMERI08G03660.2  87 FKTKLCCKFRA-GTCPYVTNCNFAHGM 112
                      69*********.*************95 PP
2zf-CCCH18.24.6e-06166191126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  OMERI08G03660.2 166 YKGRHCKKFYTEEGCPYGDACTFLHD 191
                      78888********************7 PP
3zf-CCCH43.45.8e-14242267126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  OMERI08G03660.2 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-884117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02886113IPR000571Zinc finger, CCCH-type
SMARTSM003560.001486112IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-787112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8165193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629165193IPR000571Zinc finger, CCCH-type
SMARTSM003560.3165192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7165193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-17236271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10237272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422241269IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9241268IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11242267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGS SRAGSEQPPP  60
GKKSRGGGGG EGGGNTSKSR AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH GMEELRKPPP  120
NWQEIVAAHE EATEAREEHQ IPIMTSSGPA AGDTGGGGGG GSGRAYKGRH CKKFYTEEGC  180
PYGDACTFLH DEQSKARESV AISLSPSVGG GGGGGSYNSA AAAAASASAA AGNGPMQKPS  240
NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLVD IDTRDAAATP DSKQAAVSAK  300
APAETTAAST AVPPHADVYH LGVQAQRSTI AGQRSGQVQR PIQKWKGPDK ISRIYGDWID  360
ETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046350.0AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648128.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_015648129.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0E0EI690.0A0A0E0EI69_9ORYZ; Uncharacterized protein
STRINGOMERI08G03640.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.15e-97C3H family protein