PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G03660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 363aa MW: 37667.5 Da PI: 7.2688 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.3e-10 | 87 | 112 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ OMERI08G03660.1 87 FKTKLCCKFRA-GTCPYVTNCNFAHGM 112 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.2 | 4.6e-06 | 166 | 191 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ OMERI08G03660.1 166 YKGRHCKKFYTEEGCPYGDACTFLHD 191 78888********************7 PP | |||||||
3 | zf-CCCH | 43.4 | 5.8e-14 | 242 | 267 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OMERI08G03660.1 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 84 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 84 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-7 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-7 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-17 | 236 | 271 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-10 | 237 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 241 | 269 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 241 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-11 | 242 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGS SRAGSEQPPP 60 GKKSRGGGGG EGGGNTSKSR AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH GMEELRKPPP 120 NWQEIVAAHE EATEAREEHQ IPIMTSSGPA AGDTGGGGGG GSGRAYKGRH CKKFYTEEGC 180 PYGDACTFLH DEQSKARESV AISLSPSVGG GGGGGSYNSA AAAAASASAA AGNGPMQKPS 240 NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLVD IDTRDAAATP DSKQAAVSAK 300 APAETTAAST AVPPHADVYH LGVQAQRSTI AGQRSGQVQR PIQKWKGPDK ISRIYGDWID 360 ETE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004635 | 0.0 | AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01. | |||
GenBank | AP004698 | 0.0 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648128.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_015648129.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 0.0 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A0E0EI69 | 0.0 | A0A0E0EI69_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G03640.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 5e-97 | C3H family protein |