PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G01360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 397aa    MW: 42159.9 Da    PI: 6.8267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G01360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52111391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  OMERI08G01360.1  11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQEmcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103
                      69****************************.9***************953444443456*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++   + +g++ktLvfykgrap+g+k+dW+mheyrl
  OMERI08G01360.1 104 IYN-AIHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                      ***.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-567183IPR003441NAC domain
PROSITE profilePS5100555.58811183IPR003441NAC domain
PfamPF023658.0E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQEMC  60
KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAIHR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPAADNAAAP PTVISAAAAA AMAAAASDGG QEDGWVVCRV  180
FKKKHHHKEA GSGGGGGGKH GGDGGGAKAA HAYSSSDDAL DQILQYMGRS CKQEHELPSP  240
QASGGGGGGA GSRPASRYLR PIDTVLGGHG FMKLPPLESP SAATALSSTP TTGCDAASSA  300
AADHLLLHHH HRTDWAMMDR LVASHLNGAN SDAPDDQLCF DAADDDGLAY YSAAATRLLG  360
GANGGTDDDL WSFARSAAPP PPPPPSATPE RLSHVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-46818414166NO APICAL MERISTEM PROTEIN
1ut4_B2e-46818414166NO APICAL MERISTEM PROTEIN
1ut7_A2e-46818414166NO APICAL MERISTEM PROTEIN
1ut7_B2e-46818414166NO APICAL MERISTEM PROTEIN
3swm_A3e-46818417169NAC domain-containing protein 19
3swm_B3e-46818417169NAC domain-containing protein 19
3swm_C3e-46818417169NAC domain-containing protein 19
3swm_D3e-46818417169NAC domain-containing protein 19
3swp_A3e-46818417169NAC domain-containing protein 19
3swp_B3e-46818417169NAC domain-containing protein 19
3swp_C3e-46818417169NAC domain-containing protein 19
3swp_D3e-46818417169NAC domain-containing protein 19
4dul_A2e-46818414166NAC domain-containing protein 19
4dul_B2e-46818414166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340710.0JN634071.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648974.10.0NAC domain-containing protein 43
SwissprotQ84WP61e-122NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A0E0EH540.0A0A0E0EH54_9ORYZ; Uncharacterized protein
STRINGOMERI08G01360.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.17e-87NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]