PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G23300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 303aa    MW: 34426.9 Da    PI: 5.6443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G23300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.2e-56211471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee+v++yL++k++++++++  vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+++
  OMERI07G23300.1  21 LPPGFRFHPTDEEVVTHYLTRKAQDRSFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIFR 113
                      79**************************99.78***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g lvg+kktLvfy grap+gekt Wvmheyrl
  OMERI07G23300.1 114 GRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRL 147
                      9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6317171IPR003441NAC domain
PROSITE profilePS5100557.85621171IPR003441NAC domain
PfamPF023654.6E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSESEVSVMN QQEEEETRLE LPPGFRFHPT DEEVVTHYLT RKAQDRSFSC VVIADVNLNN  60
CEPWDLPSKA KMGEKEWFFF CHKDRKYPTG MRTNRATASG YWKATGKDKE IFRGRGLLVG  120
MKKTLVFYMG RAPRGEKTPW VMHEYRLDGK LPPNLPRSAK EEWAVCRVFN KDLAAKIAQM  180
PPPPFPRNDS FDLDLDDFLH LDADLPPLID DPFASTSTLK TEPPPPANLM HNHYVYGYFS  240
LPAPATNYNH SSGAMADQAI RRFCKAEAST ACFSGADADV DPVVDELLSF PDSITDYSYI  300
WKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-55111767170NO APICAL MERISTEM PROTEIN
1ut4_B7e-55111767170NO APICAL MERISTEM PROTEIN
1ut7_A7e-55111767170NO APICAL MERISTEM PROTEIN
1ut7_B7e-55111767170NO APICAL MERISTEM PROTEIN
3swm_A6e-551117610173NAC domain-containing protein 19
3swm_B6e-551117610173NAC domain-containing protein 19
3swm_C6e-551117610173NAC domain-containing protein 19
3swm_D6e-551117610173NAC domain-containing protein 19
3swp_A6e-551117610173NAC domain-containing protein 19
3swp_B6e-551117610173NAC domain-containing protein 19
3swp_C6e-551117610173NAC domain-containing protein 19
3swp_D6e-551117610173NAC domain-containing protein 19
4dul_A7e-55111767170NAC domain-containing protein 19
4dul_B7e-55111767170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738760.0AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence.
GenBankAK1056450.0AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence.
GenBankCT8415730.0CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence.
GenBankCU4055640.0CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence.
GenBankJN1854440.0JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647863.10.0NAC domain-containing protein 87
SwissprotQ9FK445e-87NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0E0EGB20.0A0A0E0EGB2_9ORYZ; Uncharacterized protein
STRINGOMERI07G23780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-85Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]