PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G20490.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 571aa MW: 60480.1 Da PI: 5.687

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G20490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.7e-15	115	175	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ OMERI07G20490.1 115 EAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQL 175 78********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.0E-14	113	177	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-14	115	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.415	115	175	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-17	117	175	No hit	No description
SuperFamily	SSF57959	1.0E-13	117	175	No hit	No description
CDD	cd14704	6.91E-22	118	169	No hit	No description
PROSITE pattern	PS00036	0	121	135	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MAEPDLLAPF ADLPFPPPFP GDDLPDFPAL GDDAFALEDF DLEDLDFDFD VDLFPPDAPP 60 PVTTSSSSAA GSPEAGTSST GDGGSKNEES ADSSSPSRSG SDGGGGGGKD GKDDEAKRRA 120 RLVRNRESAH QSRQRKKQYV EELEGKVKVM QATIADLTAR ISCVTAENAA LKQQLGGAAG 180 AGAPPPPMPM YPAVYPLPMP WIHPAYAMRG SQVPLVPIPR LKTQQAASTP EPPAKKARKT 240 KKVAGVSLLG LLFLMMVCGC LVPAINRMYG AAYTGEGAAI VPSHHGRILA VEGPQNSVSN 300 GVDPKVPQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSRLSN YGGKDSENQG 360 KEETSLAIPG YVAPLEAGEV MDSAKGMRNE LMALAPGDGS IYREDDGMLP QWFSEAMSGP 420 MLNSGMCTEV FQFDLSPTTA DANGIVPVYS GSVTNTSQNY TENLPSGPVQ KVKNRRISYS 480 EAIPLRGSTS NDTDHFKAPP KNHSQSHAGR KPVSSVVVSV LADPREASDR DGEGRISSNS 540 LSRIFVVVLI DSVKYVTYSC VLPFKSHSPH L

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MAEPDLLAPF ADLPFPPPFP GDDLPDFPAL GDDAFALEDF DLEDLDFDFD VDLFPPDAPP  60
PVTTSSSSAA GSPEAGTSST GDGGSKNEES ADSSSPSRSG SDGGGGGGKD GKDDEAKRRA  120
RLVRNRESAH QSRQRKKQYV EELEGKVKVM QATIADLTAR ISCVTAENAA LKQQLGGAAG  180
AGAPPPPMPM YPAVYPLPMP WIHPAYAMRG SQVPLVPIPR LKTQQAASTP EPPAKKARKT  240
KKVAGVSLLG LLFLMMVCGC LVPAINRMYG AAYTGEGAAI VPSHHGRILA VEGPQNSVSN  300
GVDPKVPQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSRLSN YGGKDSENQG  360
KEETSLAIPG YVAPLEAGEV MDSAKGMRNE LMALAPGDGS IYREDDGMLP QWFSEAMSGP  420
MLNSGMCTEV FQFDLSPTTA DANGIVPVYS GSVTNTSQNY TENLPSGPVQ KVKNRRISYS  480
EAIPLRGSTS NDTDHFKAPP KNHSQSHAGR KPVSSVVVSV LADPREASDR DGEGRISSNS  540
LSRIFVVVLI DSVKYVTYSC VLPFKSHSPH L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121898	0.0	AK121898.1 Oryza sativa Japonica Group cDNA clone:J033105F09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647746.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0E0EF60	0.0	A0A0E0EF60_9ORYZ; Uncharacterized protein
STRING	OMERI07G20920.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	4e-73	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]