PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G18140.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 276aa MW: 30066.2 Da PI: 9.2811 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.4 | 1e-32 | 123 | 179 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF OMERI07G18140.3 123 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 179 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-37 | 121 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.238 | 122 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-27 | 124 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-24 | 125 | 147 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 127 | 147 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.6E-24 | 156 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MKQLGHKMYD QDSPSSDSGQ SHQEESAMND SSPNERHTST QSDNDDGPQM PDQDKTKSVS 60 SLGNPGALPP KLDYSQSFAC IPYAADAYYG GVLTGYSSHA IVHPQQNGTA NSRVPLPVEP 120 AAEEPIFVNA KQYHAILRRR QIRAKLEAQN KLVKGRKPYL HESRHRHAMK RARGSGGRFL 180 NTKQLEEQKQ QEEEAASGGA SSGNRTCLQN GTGSAPSTSA PSEIASVSSS REFLGNHEQS 240 HFPSAGILPT MSFRAQNGRD GKLVANAIHQ RVSMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-23 | 123 | 184 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 172 | RHRHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288033 | 0.0 | AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK101684 | 0.0 | AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646559.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646560.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646561.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646562.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Swissprot | Q9LNP6 | 2e-41 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | A0A0E0EE65 | 0.0 | A0A0E0EE65_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G21630.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ONIVA06G16650.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART07G21740.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-33 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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