PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G18140.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 276aa MW: 30066.2 Da PI: 9.2811

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G18140.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.4	1e-32	123	179	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF OMERI07G18140.2 123 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 179 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-37	121	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.238	122	182	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-27	124	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-24	125	147	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	127	147	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-24	156	179	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MKQLGHKMYD QDSPSSDSGQ SHQEESAMND SSPNERHTST QSDNDDGPQM PDQDKTKSVS 60 SLGNPGALPP KLDYSQSFAC IPYAADAYYG GVLTGYSSHA IVHPQQNGTA NSRVPLPVEP 120 AAEEPIFVNA KQYHAILRRR QIRAKLEAQN KLVKGRKPYL HESRHRHAMK RARGSGGRFL 180 NTKQLEEQKQ QEEEAASGGA SSGNRTCLQN GTGSAPSTSA PSEIASVSSS REFLGNHEQS 240 HFPSAGILPT MSFRAQNGRD GKLVANAIHQ RVSMMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	123	184	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	172	RHRHAMKRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288033	0.0	AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds.
GenBank	AK101684	0.0	AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646559.1	0.0	nuclear transcription factor Y subunit A-4
Refseq	XP_015646560.1	0.0	nuclear transcription factor Y subunit A-4
Refseq	XP_015646561.1	0.0	nuclear transcription factor Y subunit A-4
Refseq	XP_015646562.1	0.0	nuclear transcription factor Y subunit A-4
Swissprot	Q9LNP6	2e-41	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A0E0EE65	0.0	A0A0E0EE65_9ORYZ; Uncharacterized protein
STRING	OGLUM07G21630.1	0.0	(Oryza glumipatula)
STRING	ONIVA06G16650.1	0.0	(Oryza nivara)
STRING	OBART07G21740.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	2e-33	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]