PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G17070.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HRT-like

Protein Properties

Length: 621aa MW: 68907.7 Da PI: 9.6467

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G17070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.7	9.2e-19	310	339	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R OMERI07G17070.1 310 VCGVMLEDGSSCLDPPVQGRKRCELHKGRR 339 7****************************9 PP
2	HRT-like	52	1.1e-16	584	613	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP+ gRKRC HKG+R OMERI07G17070.1 584 ICGARASDGSPCKNQPIAGRKRCTMHKGQR 613 8****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	0.0075	73	182	IPR000305	GIY-YIG nuclease superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGVQR YRVLNLPENF 60 PGLYELGVAR ASDEGIRAAR RWNGSGGGVV VVYLGQADSV RARLQQYGRT GSHLDAGNPP 120 PSAGEAETNP RATRNGLFRE VFVRGYSLVF RCALMGNKQE AEKTEARLLR VFDYAWNKLQ 180 NGVLRREEIL IKLEQGAVNN RSSLLSRVRH FKQEMFREKA GIKISRNGSV DVSSGIMKYM 240 LPRIRTFVGF RPQLVNSGDN VDKEIGIRWK NTSEGNSYGK QARRSSEGYK VKRVDVIKRR 300 TIPEQDSNDV CGVMLEDGSS CLDPPVQGRK RCELHKGRRL GRITVNPKGS SHSYSCQVEI 360 PVVESISPLT ENESESDQAQ QTSELLSKFL PATVKESSRP RYSFEAKEMK TGEAPIENGK 420 HETSEVIDIC EAKKSDNSAC TNKVISVSKK CQLHNGCKAE QFVSSRVIDL LQNEEKVHSM 480 TGDKLSGEEI SHGKYQSQEN QPSGRMWFEL IKLQNSTSTL SSKGQGRQRR VTSDVATICE 540 ALTDNRCRET IPMAGRERCD AHEGIKVTDA SSVPFSGSSG WPSICGARAS DGSPCKNQPI 600 AGRKRCTMHK GQRACRTPSI D

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGVQR YRVLNLPENF  60
PGLYELGVAR ASDEGIRAAR RWNGSGGGVV VVYLGQADSV RARLQQYGRT GSHLDAGNPP  120
PSAGEAETNP RATRNGLFRE VFVRGYSLVF RCALMGNKQE AEKTEARLLR VFDYAWNKLQ  180
NGVLRREEIL IKLEQGAVNN RSSLLSRVRH FKQEMFREKA GIKISRNGSV DVSSGIMKYM  240
LPRIRTFVGF RPQLVNSGDN VDKEIGIRWK NTSEGNSYGK QARRSSEGYK VKRVDVIKRR  300
TIPEQDSNDV CGVMLEDGSS CLDPPVQGRK RCELHKGRRL GRITVNPKGS SHSYSCQVEI  360
PVVESISPLT ENESESDQAQ QTSELLSKFL PATVKESSRP RYSFEAKEMK TGEAPIENGK  420
HETSEVIDIC EAKKSDNSAC TNKVISVSKK CQLHNGCKAE QFVSSRVIDL LQNEEKVHSM  480
TGDKLSGEEI SHGKYQSQEN QPSGRMWFEL IKLQNSTSTL SSKGQGRQRR VTSDVATICE  540
ALTDNRCRET IPMAGRERCD AHEGIKVTDA SSVPFSGSSG WPSICGARAS DGSPCKNQPI  600
AGRKRCTMHK GQRACRTPSI D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102792	0.0	AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644815.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A0E0EDS0	0.0	A0A0E0EDS0_9ORYZ; Uncharacterized protein
STRING	OMERI07G17410.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-65	effector of transcription2