PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15850.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 649aa    MW: 68709.2 Da    PI: 6.9416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08277299426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  OMERI07G15850.3 277 VPCPNFRRPGGCPSGDSCEFSHG 299
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.78E-1366146IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-1566147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.276898IPR002110Ankyrin repeat
PfamPF127964.5E-868135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46768143IPR020683Ankyrin repeat-containing domain
CDDcd002043.45E-1270146No hitNo description
SMARTSM002480.0044103135IPR002110Ankyrin repeat
PROSITE profilePS5008812.529103138IPR002110Ankyrin repeat
SMARTSM003565.6E-4273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995273301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5274302IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6277299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6277300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4305338IPR000571Zinc finger, CCCH-type
SMARTSM0035621309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGCVDVNRRP GVDGATALHC AASGGSRNAV  120
AVVKLLLAAG ADPATPDSAG RFPADVILAP PASPDALGDL EVLLGRRRAL AVATSVASGS  180
SSPPLSSSPD EGNRSPSSRS SSLSPITVDR GKKEYPVDPT LPDIKSSVYA SDEFRMFAFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KHPYTAVPCP NFRRPGGCPS GDSCEFSHGV  300
FESWLHPSQY RTRLCKEGAA CARRICFFAH DEDELRHVPH NSGAGLLSPR ASSSIDMTAA  360
AALGLLPGSP TRHFAPPPVS PSAGSNGGAA AAHWLQGSRL RSSFNARDAA VDDLGMLLEW  420
ESQYLGALCL PPSSRPQPRL SAGLSIRPTI APSNLEDMYA SDMAMSPRFP NDQGHSVYSP  480
AHKSALLNKL HQQKGLLSPV NTNRMYSPRA LDPSSLAHSP FGGMSPRSPR TMEPTSPLSA  540
RLPSVGSPRN STAWGTVGSP MGKVDWGVDS EELVRLRRPA QPGFGEDETD VSWVQSLVSN  600
AELNGKRGEV QGMPGTSALM NRPDLNNQGD LLDQTVIGAW LEQMHLDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A4e-1123933214118RING finger protein unkempt homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647507.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_015647508.10.0zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0E0ED940.0A0A0E0ED94_9ORYZ; Uncharacterized protein
STRINGOPUNC07G18060.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-127CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]