PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G08390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 558aa    MW: 61990.8 Da    PI: 10.0732
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G08390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN358.22.5e-1871226116270
                      XXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--T..TT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHH CS
             EIN3 116 nlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfpl..ekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkv 207
                      ++++++++   + rs   + +s l D  l  + + lm+ c ppq  +pl  +  + pPWWPtG+elww+elg+ +    ppy+  + l ka k 
  OMERI07G08390.1  71 DMASGSGDAHPAPRSPLATAVSALADHVLECMVKVLMRKCHPPQEVYPLigKSPLRPPWWPTGRELWWPELGAGA--VVPPYRPARFLSKAEKE 162
                      556666667778899999******************************95456799*************999764..468***********996 PP

                      HHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.XXXXX CS
             EIN3 208 svLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.slrkq 270
                          a +k + p+++++   +r   ++ ++++  e  a+   +  e++e+   ++h    +r +
  OMERI07G08390.1 163 VAVVAMVKNLVPDFKRLAMAVRMAPSVTSRITDAEARAWDDGVATEREEYMARHPHRAtPTRAR 226
                      666788999*****************************************99999944233333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3180.107.2E-3784218IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.59E-4289213IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048732.7E-1889206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDVPKKSVMT KEEQQLSPAA NPAAAVMTAE ADAINEEQDK AAAATSADHT PPPPPPAAAA  60
VAAGRVTGEM DMASGSGDAH PAPRSPLATA VSALADHVLE CMVKVLMRKC HPPQEVYPLI  120
GKSPLRPPWW PTGRELWWPE LGAGAVVPPY RPARFLSKAE KEVAVVAMVK NLVPDFKRLA  180
MAVRMAPSVT SRITDAEARA WDDGVATERE EYMARHPHRA TPTRARSLMD SLKPEAVRMK  240
LKAPKPKPQV TIKVEDAAPF LTVSAAADPA AVKAAMGAIE AMRNSSKDPD APYYPMPSPL  300
RGHNEVGPND YPAENPTIWK EFNRKEGQLK LLRVGKKNGW MVISDRVDGG ANGSGPRKGH  360
LVMKTYKKAQ EYYHELRNKG AMASGAGVKI KDDSETESDN EDEMAYEKAM AKANARAMYQ  420
QNKVVIAFLW SIIVADDQYQ NHLKCDDAML IQVLKLKIRV KPKVMMKMKR LRLWLRLRLR  480
LELYLDQTKC FSIFLRSVIV ANDRYRNHLK LMMPWCFVHY RDGKGWVKLR QSKSTGPTLD  540
PARYRLARAM PDSLSGHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-159420115121ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051720.0AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646400.20.0uncharacterized protein LOC107276281
TrEMBLA0A0E0EA210.0A0A0E0EA21_9ORYZ; Uncharacterized protein
STRINGOMERI07G08430.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-14ETHYLENE-INSENSITIVE3-like 1