PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G06850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 432aa    MW: 46874.2 Da    PI: 7.3064
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G06850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17118167155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OMERI07G06850.1 118 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 167
                      78*******************......55************************998 PP
2AP242.51.6e-13210260155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  OMERI07G06850.1 210 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 260
                      89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-16118176IPR016177DNA-binding domain
PfamPF008471.9E-9118167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17119175IPR001471AP2/ERF domain
CDDcd000187.97E-11119174No hitNo description
SMARTSM003803.1E-31119181IPR001471AP2/ERF domain
PROSITE profilePS5103217.82119175IPR001471AP2/ERF domain
PfamPF008474.0E-9210260IPR001471AP2/ERF domain
CDDcd000181.52E-26210270No hitNo description
SuperFamilySSF541716.47E-17210269IPR016177DNA-binding domain
PROSITE profilePS5103216.107211268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-16211268IPR001471AP2/ERF domain
SMARTSM003804.2E-33211274IPR001471AP2/ERF domain
PRINTSPR003671.7E-6212223IPR001471AP2/ERF domain
PRINTSPR003671.7E-6250270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVLDLNVESP GGSAATSSSS TPPPPPPPDG GGGGFFRFDL LGGSPDEDGC SPPVMTRQLF  60
PSPSAVVALA GDGSSPAAAA AAGEGSWPRR AADLGVAQSQ RSPAGGKKSR RGPRSRSSQY  120
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGLDA DINFNLNDYE  180
DDLKQMRNWT KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL  240
FDSEIEAARA YDRAAIRFNG REAVTNFDPS SYDGDVLPET DNEVVDGDII DLNLRISQPN  300
VHELKSDGTL TGFQLNCDSP EASSSVVTQP ISPQWPVLPQ GTSMSQHPHL YASPCPGFFV  360
NLREVPMEKR PELGPQSFPT WSWQMQGSPL PLLPTAASSG FSTGTVADAA RAPSSRPHLF  420
PGHHQFYFPP TA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
GenBankDQ3746630.0DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647891.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ8H4430.0AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0E0E9H40.0A0A0E0E9H4_9ORYZ; Uncharacterized protein
STRINGOMERI07G06890.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-93related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]