PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G05070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 699aa    MW: 73468.4 Da    PI: 3.8692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G05070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.56.2e-2481421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....d 89 
                      lppG++F+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ ++ +fF+ ++ k+ +g+r++r +   gyW+ +      +
  OMERI07G05070.1   8 LPPGVKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFADARAKNGKGSRQKRtVEGGGYWQGQRMcvdgE 100
                      79****************************99***************744.4566799******************555599**9776544323 PP

              NAM  90 kevlsk......kgel.vglkktLvfykgrapkgektdWvmheyrl 128
                      + v         +g +  + k +L ++ ++ +kg ++ Wvmhey++
  OMERI07G05070.1 101 RLV--VpdggggGGVEiPWRKYVLSYF-ADGEKG-SSGWVMHEYAI 142
                      333..2357766333325667778888.556665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-315161IPR003441NAC domain
PROSITE profilePS5100527.8078161IPR003441NAC domain
PfamPF023658.9E-159141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MATAGDGLPP GVKFEPKDDE LVARFLLARI QGKPLPLHGV ILDADPLCAP PWRLLADHGR  60
GDDAFFFADA RAKNGKGSRQ KRTVEGGGYW QGQRMCVDGE RLVVPDGGGG GGVEIPWRKY  120
VLSYFADGEK GSSGWVMHEY AITAPAELAS SAMRLYRIRF SGHGKKRKRE PESHSAPPPQ  180
PVHPPAAVVN SISDGTDQGF SGAVPPPAPV VHHTNGSDVT NQYSSLVFSD QAGSIDEDEQ  240
QSFVPEFPAR NLFVSLPEGS HEAEADVGGG ALPAQSVSSL ADVGGPENMD DQSCSGVVFA  300
NLPELIVLPP APSLDNQNDE APVFFEFPES MDDIVGCFGF AAMDDQSCTS QEHFLPPASM  360
VNHHDDYASD SADQGCSGAV PLPSAVVDLP NESCSGKGDN SALFFSDLTG SIDEDELQSF  420
VPEFAASNLF SFVPEFAASN LFVSLPQGSC EADAEADSGG GVAPAQFAEF GGPESLDDPL  480
NFPAEASGGG DRAAPASSWV SSQDNQNDEA PMFFELPESL DDMVGCFDFA AMDGQSCTSA  540
VSETALIEGL VLPAAAMVNH HDDFVSDIAD HGCSISVPPP NSAVVDLPSD SDGADQSCSG  600
YYEAELKVPL EYAARNPVDS PAKGGNEAEV DASNGAGSMM SSPDKQKEHS SSGVMDVEAT  660
GFGDNGGMDS LSCIDFAETM DDLSCIDFTI DDELFDLWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038480.0AP003848.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1715_A07.
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0E8T60.0A0A0E0E8T6_9ORYZ; Uncharacterized protein
STRINGONIVA07G05240.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.16e-11NAC domain containing protein 47