PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G01690.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 610aa    MW: 65386.2 Da    PI: 5.0999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G01690.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05499524123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+  +C ++F+++ +L +H ++ +
  OMERI07G01690.2 499 FQCEidYCRMTFKNRAELSVHKKNtC 524
                      89*******************99866 PP
2zf-C2H212.50.00045524546323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cg++F+++ +L+rH++ H
  OMERI07G01690.2 524 CTvkSCGRHFRSHKYLRRHQSIH 546
                      88889***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516499521IPR015880Zinc finger, C2H2-like
SMARTSM003550.42522546IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009522551IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4523546IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280524546IPR007087Zinc finger, C2H2
SuperFamilySSF576673.31E-9538580No hitNo description
Gene3DG3DSA:3.30.160.605.8E-10547573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04552576IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887552581IPR007087Zinc finger, C2H2
PROSITE patternPS000280554576IPR007087Zinc finger, C2H2
SuperFamilySSF576675.66E-7571605No hitNo description
Gene3DG3DSA:3.30.160.602.4E-7574604IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539582604IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MVCFCSPMIP QVVAPDAIKQ KGHIAGRGLE PELRSDPRVG LAERPPVPED QGRDIDGGPP  60
AKRPLTFTDA AARLEGSGNV GAGVATEPAA RVGAPVANGA VSGQEDRAAT CLADESAAEL  120
IATGVTSLVT GATAEPEVLK GASFANANVT EPRILERVPL VCEAATEPEA EVSVPEVTEG  180
ALPDGEDAAK LEITRGLSRE SADKMEVTKG ISLVTEASAD SELAHRVPTE PGVELSLPEV  240
TERVPVVTED FTELGDTFSG LHITGFASLD NEGSVEQEVT GSCSLVNEAT EMEVKEGTCI  300
FTRVATELGD TGRVSACSGD GDIALDEPRP PDCVSEVANV NVGNAGEAVA SKVQPFRDNA  360
ESFGGSINST GNGHVSSKGP TADEAAPPGG CTDTPSASCL SDILARSIGK SGRTDIICYV  420
RRRGKRKLEM VEVKEENVEM DDSAICDQYD DKVASERTGP CESVTSTAVS VEIKIADIKR  480
DLEDNSTASK GKKKRAKRFQ CEIDYCRMTF KNRAELSVHK KNTCTVKSCG RHFRSHKYLR  540
RHQSIHNDDM PYKCPWEGCS MAFKWSWDRG EHFQVHAGKR PYKCTTPGCS KIYKFVSDFT  600
RHKRRCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4349960523129Lysine-specific demethylase REF6
6a58_A3e-4349960523129Lysine-specific demethylase REF6
6a59_A3e-4349960523129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRRGKRK
2420427RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0E0E7E50.0A0A0E0E7E5_9ORYZ; Uncharacterized protein
STRINGORUFI03G03520.10.0(Oryza rufipogon)
STRINGOS03T0148800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.18e-41relative of early flowering 6