PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G01690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 406aa    MW: 44581.9 Da    PI: 6.5717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G01690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05295320123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+  +C ++F+++ +L +H ++ +
  OMERI07G01690.1 295 FQCEidYCRMTFKNRAELSVHKKNtC 320
                      89*******************99866 PP
2zf-C2H213.30.00025319342223
                      EET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                      +C+   Cg++F+++ +L+rH++ H
  OMERI07G01690.1 319 TCTvkSCGRHFRSHKYLRRHQSIH 342
                      588889***************999 PP
3zf-C2H210.80.0015378402123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ykC+   C+k ++  s+++rH r++
  OMERI07G01690.1 378 YKCTtpGCSKIYKFVSDFTRHKRRC 402
                      99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009318347IPR007087Zinc finger, C2H2
SMARTSM003550.42318342IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4319342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280320342IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-9334376No hitNo description
Gene3DG3DSA:3.30.160.603.3E-10343369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887348377IPR007087Zinc finger, C2H2
SMARTSM003550.04348372IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280350372IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-7367401No hitNo description
Gene3DG3DSA:3.30.160.601.4E-7370400IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539378400IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEVTKGISLV TEASADSELA HRVPTEPGVE LSLPEVTERV PVVTEDFTEL GDTFSGLHIT  60
GFASLDNEGS VEQEVTGSCS LVNEATEMEV KEGTCIFTRV ATELGDTGRV SACSGDGDIA  120
LDEPRPPDCV SEVANVNVGN AGEAVASKVQ PFRDNAESFG GSINSTGNGH VSSKGPTADE  180
AAPPGGCTDT PSASCLSDIL ARSIGKSGRT DIICYVRRRG KRKLEMVEVK EENVEMDDSA  240
ICDQYDDKVA SERTGPCESV TSTAVSVEIK IADIKRDLED NSTASKGKKK RAKRFQCEID  300
YCRMTFKNRA ELSVHKKNTC TVKSCGRHFR SHKYLRRHQS IHNDDMPYKC PWEGCSMAFK  360
WSWDRGEHFQ VHAGKRPYKC TTPGCSKIYK FVSDFTRHKR RCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4129540123129Lysine-specific demethylase REF6
6a58_A3e-4129540123129Lysine-specific demethylase REF6
6a59_A3e-4129540123129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222RRRGKRK
2216223RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057340.0AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0E0E7E40.0A0A0E0E7E4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0E7E50.0A0A0E0E7E5_9ORYZ; Uncharacterized protein
STRINGOMERI07G01740.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.19e-42relative of early flowering 6