PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G23650.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 294aa    MW: 32064.8 Da    PI: 6.7674
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G23650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13127186356
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLe......ekvkeLeaeNkaLkkeleelkkev 56 
                      e kr rr+ +NRe+ArrsR+RK+a++ eLe      + v++L++eN++L k+l e +++ 
  OMERI06G23650.1 127 ETKRIRRMVSNRESARRSRRRKQAQLSELEsqqsiyDQVEQLKGENSSLFKQLTESSQQF 186
                      68***************************944444457************8888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-13125195IPR004827Basic-leucine zipper domain
PfamPF001702.7E-11127185IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.818127158IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.25E-9129184No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-11129186No hitNo description
PROSITE patternPS000360132147IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRAARSSEEA MMKKCPSELQ LEAFIREEAG AGERNSGDSE MSVLDQSILD GSGGGHHLWW  60
PESVRTPPRA AAAFSATVDT RTPASISDGP KPTTSANHAP ESDSDSDCDS LLEAERSPRL  120
RGTKSTETKR IRRMVSNRES ARRSRRRKQA QLSELESQQS IYDQVEQLKG ENSSLFKQLT  180
ESSQQFNTAV TDNRILKSDV EALRVKVKMA EDMVARAAMS CGLGQLGLAP LLSSRKMCQA  240
LDMLSLPRND GCGFKGLSLG RQVQNSPVQS AASLESLDNR ISSEVTSCSA DVWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141148RRSRRRKQ
2143148SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534740.0AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
GenBankBT1291010.0BT129101.1 Oryza sativa clone RRlibA00185 mRNA sequence.
GenBankCT8328530.0CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643805.11e-162bZIP transcription factor RISBZ5
SwissprotQ654B31e-163RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLA0A0E0E4U90.0A0A0E0E4U9_9ORYZ; Uncharacterized protein
STRINGOMERI06G21970.11e-172(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-25basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]