PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G21540.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 426aa    MW: 46521.8 Da    PI: 8.7633
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G21540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.5e-12120148533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le+
  OMERI06G21540.1 120 KTLRRLAQNREAARKSRLRKKAYIQQLET 148
                      7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-9115160No hitNo description
SMARTSM003388.6E-6116188IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.565118147IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-7120150No hitNo description
PfamPF001702.3E-9120148IPR004827Basic-leucine zipper domain
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
PfamPF141441.1E-25197271IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPSDLDQALL LYFDGQEQDK PSTQEEPHKP LNFVKETLSI FPSQPMDGET TPTPKASTSA  60
LPIAGSSRRS PAPAAADGRT LAVGKTSKAA FKREGGGGGG SAMAASASSE LEGPKTPDPK  120
TLRRLAQNRE AARKSRLRKK AYIQQLETGR IRLAHLEQEI QFTRAQGAFC GAGILSPDTA  180
LFNLEYERWQ EAHQQVISRL RAAVEEHRPD GELQPHVDEA MSHYGVLMAH KARLVGADPL  240
HLLSGLWKGA VEQCFLWIGG FRPSELIKVV VRHVEPLTEQ QLAAVYSAQQ AARQEEDALD  300
GGLQALLRSL SDVVSSSDAP SSSQQTPPVM YHHHHPPAAA AAMAAASFMG QYGSYSNLQL  360
AMDKLANLAI FLRQADEVRM RTLHALRRML TVRQAARCFV AVDDYFGRLR ALALFWTTTR  420
PHPAAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643999.10.0transcription factor TGAL8 isoform X1
RefseqXP_015644001.10.0transcription factor TGAL8 isoform X2
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A0E0E3W30.0A0A0E0E3W3_9ORYZ; Uncharacterized protein
STRINGORGLA06G0174900.10.0(Oryza glaberrima)
STRINGOBART06G21000.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-90bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]