PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G17150.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 209aa    MW: 22765.4 Da    PI: 4.7969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G17150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF787e-251966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
  OMERI06G17150.1 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66
                     8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.33E-261080IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-311069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.7451070IPR002100Transcription factor, MADS-box
CDDcd002655.77E-331178No hitNo description
PRINTSPR004042.2E-211232IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRPRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA  60
GNVFAFGQPT VDAVLRRFDP LHADADGAAP APAAVEDGGD DVVVADPEEL DALRRAEEQT  120
KAQVAAEQAR VRDVGDKVTQ AMAGRPLWWE ADVEALGEAE LPEFVRALER LRDSVRRHAS  180
TLPSTASPPP PPPEQEEEVP ELDVSDYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-151078169Myocyte-specific enhancer factor 2B
1tqe_Q1e-151078169Myocyte-specific enhancer factor 2B
1tqe_R1e-151078169Myocyte-specific enhancer factor 2B
1tqe_S1e-151078169Myocyte-specific enhancer factor 2B
6c9l_A1e-151078169Myocyte-specific enhancer factor 2B
6c9l_B1e-151078169Myocyte-specific enhancer factor 2B
6c9l_C1e-151078169Myocyte-specific enhancer factor 2B
6c9l_D1e-151078169Myocyte-specific enhancer factor 2B
6c9l_E1e-151078169Myocyte-specific enhancer factor 2B
6c9l_F1e-151078169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.11e-102agamous-like MADS-box protein AGL62
TrEMBLA0A0E0E2941e-146A0A0E0E294_9ORYZ; Uncharacterized protein
STRINGOMERI06G15850.11e-146(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-17AGAMOUS-like 61