PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G14190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 647aa    MW: 74234.6 Da    PI: 9.6768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G14190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07432472346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  OMERI06G14190.1 432 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 472
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2356427IPR001005SANT/Myb domain
PROSITE profilePS500903.95359425IPR017877Myb-like domain
SuperFamilySSF466897.19E-7405479IPR009057Homeodomain-like
SMARTSM007170.51429476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6431479IPR009057Homeodomain-like
PROSITE profilePS500906.806432474IPR017877Myb-like domain
PfamPF139211.1E-5433476No hitNo description
SMARTSM0071721494560IPR001005SANT/Myb domain
PROSITE profilePS500906.574495558IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5497577IPR009057Homeodomain-like
SuperFamilySSF466891.68E-6538615IPR009057Homeodomain-like
PROSITE profilePS500907.898560613IPR017877Myb-like domain
SMARTSM0071719564615IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MGGEGAEREE RRSKKKGKRQ EENAESGRRG DGEAVKLDLA TDIPSNSKGK VAMDVEEAKE  60
VHRRKKRKEK EKEKDHGKEK KNKVSADNIE EACAEAEQAE ASGLKVEQHC SEHVEGDKSK  120
CGSEEDKSIK KDNKLKKKKK KKKKKKKERK VEMAGDRQVL AGSTDENADL EHAEMGGGEK  180
EQGKKSKKSK QKHEDGEPVA DGSAGYEIMT NRDKKKRRKE HSVELKEGDQ VNISKKAVKI  240
KGNKKRKNES DKFNPDLSID SLTGEDKVGG DGKNDKRKKK NDTLTRRNEV GRDDKNDKKK  300
KKSKEGNGGR KGEKEKAAQS KDKVRRVSFS DAVEVFSINN GEDEDNGKSA ESEVVHGKRF  360
TPEENATLME AIMSYIEMKQ LGENGLEMIR ACSKHPELKG CWAEIGKSLP HRPLTAIYKR  420
ARILLYRSDE RKWTPEEYEK IRRHVEKNGT SWISLAQELG KSEIHLKDTW RRIKPKNLKS  480
VARFCISVKW KDSLQSQWTQ DEYQNLFDLV NLDLRVKAHQ EYDAGNRKLR DNIAWEAISD  540
KLTTRNHKNC CLKWYYQLAS PLVQKGIWAD TDDYRLVEAL QNVDAVCVED IDWDNLLDHR  600
SGEVCRQRWN EMVRYLGGHK EKPFIEQVEV LSKRYCPEMV DYREGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368RKKRKE
26369RKKRKEK
3133140KLKKKKKK
4134149LKKKKKKKKKKKKERK
5137146KKKKKKKKKK
6140146KKKKKKK
7141149KKKKKKERK
8213217KKKRR
9213218KKKRRK
10214218KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0E1710.0A0A0E0E171_9ORYZ; Uncharacterized protein
STRINGOMERI06G13250.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-95MYB_related family protein