PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G13890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 340aa    MW: 37257 Da    PI: 8.033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G13890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09182229455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OMERI06G13890.1 182 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 229
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17176244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-10176233No hitNo description
PROSITE profilePS5088815.542178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16178242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSKHQGAKLA LLFSLCQEEV VLLFSLKKPN FQSTTPKSFR HREFSSSKAM ADFSPHHSLL  60
LKATAAGAAI ATTNDPNISS FFLYNHSHVS QPPQPANAAA AAIVEDASLE SSVSAVLDTS  120
PSVDRKRKAA EDSAHSKDSC KDGKSRRGKK ASKEVEEKST TEDEPPKGYI HVRARRGQAT  180
DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE IINYVQSLQN QVEFLSMRIA  240
SMSPVLYGFG MDSDGLHDQK IGGMFQEALA MPTPVLNQSS PAPSQAIMDT TSTTSYSLQS  300
QHGAISFSQD NSSYLMQAVG EPRQQEMLNQ LVFNNMCSFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649580.10.0transcription factor bHLH137 isoform X1
SwissprotQ93W882e-57BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0E0E1180.0A0A0E0E118_9ORYZ; Uncharacterized protein
STRINGOMERI06G12910.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]