PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G11830.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 460aa    MW: 49909.4 Da    PI: 7.1453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G11830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10169208443
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                       k +rr+++NReAAr+sR RKka+i++Le    +L    +
  OMERI06G11830.1 169 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQ 208
                      589**************************97777765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-7166265IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588168212IPR004827Basic-leucine zipper domain
CDDcd147088.87E-21170222No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-8170214No hitNo description
PfamPF001701.8E-7170210IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-7170213No hitNo description
PROSITE patternPS000360173188IPR004827Basic-leucine zipper domain
PfamPF141443.2E-31255331IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAPSSLLIIF FLLPTSRSSA LVTHATVSST VAFQELLLCP NPSSKSSSNL TAGGHLPPLA  60
GAAAAAQQHG VAVVGMAAHQ GMAATAADRF CLPRMAAAAA SQVENWGDSG VVVSSPFTDD  120
TSTDLDDSAD KHHLHALMGG GGDGDGRDDA GEQRGADSSA VSKERRGDQK MQRRLAQNRE  180
AARKSRMRKK AYIQQLESSR SKLMHLEQEL QRARQQGIFI ATGGSGDHGH SIGGNGGTLA  240
FDLEYARWLD EHQRHINDLR VALNAQMSDD ELRVLVDAVM MHYDQVFRLK SFATKSDVFH  300
VLSGMWMSPA ERFFMWLGGF RSSELLKVLA SHLEPLTDQQ LMGICNLQQS SQQAEDALSQ  360
GMEALQQTLG DTLVSAAATV VGGGGADNVT NYMGQMAIAM AKLTTLENFL RQADLLRHQT  420
LQQMHRILTT RQAARALLVI SDYFSRLRAL SSLWLARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0E0E0940.0A0A0E0E094_9ORYZ; Uncharacterized protein
STRINGORUFI06G10660.10.0(Oryza rufipogon)
STRINGONIVA06G11770.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-119bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]