PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G11610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 239aa    MW: 27202.5 Da    PI: 9.9793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G11610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.6e-1282149348
                      SS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...................tWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++  ++G++                   +W+++a+ m+    +R++ qc++rw+++l
  OMERI06G11610.1  82 AWTPEEDAVLERLAVEHGSRhwrredavlerlavehgsrHWRRVAAQMPrrrSRRSPAQCRDRWRDHL 149
                      7***************************************************9************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2E-979151IPR001005SANT/Myb domain
PfamPF139211.9E-983166No hitNo description
PROSITE profilePS5129413.4895153IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-13105159IPR009057Homeodomain-like
SuperFamilySSF466893.75E-15105201IPR009057Homeodomain-like
SMARTSM007170.65154207IPR001005SANT/Myb domain
PROSITE profilePS500905.901157205IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-5160204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDMELSSSSS STTVASSPLS PPLGRCVLRI RLPPAWTPEE DAVLXHAMDM ELSSSSSSTT  60
VASSPLSPPL GRCVLRIRLP PAWTPEEDAV LERLAVEHGS RHWRREDAVL ERLAVEHGSR  120
HWRRVAAQMP RRRSRRSPAQ CRDRWRDHLA RDVFHRPFTA ADDAELARLC LRIDDDAAGH  180
RWKDVSRAVY GRSSFAVKRR WRELRRSDAF LSALWRPRTT TYGAASQCRD HDDVLMNCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-1310620118103MYB21
3osf_D2e-1310620118103MYB21
3osg_A2e-1310620118103MYB21
3osg_D2e-1310620118103MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046511e-164AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBankAP0051071e-164AP005107.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0431E05.
GenBankAP0149621e-164AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-164CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642261.16e-77transcription factor MYB44
TrEMBLA0A0E0E0571e-166A0A0E0E057_9ORYZ; Uncharacterized protein
STRINGOMERI06G10920.11e-167(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-09myb domain protein r1