PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G11100.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 307aa    MW: 32843.8 Da    PI: 5.321
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G11100.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.92.2e-23199261163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv eL+a N++L+ el++lkk ++ +++e+
  OMERI06G11100.2 199 ERELKRERRKQSNRESARRSRLRKQQECEELSQKVTELTAVNSTLRTELDKLKKDCEDMEAEN 261
                      89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-17192259No hitNo description
SMARTSM003384.5E-21199263IPR004827Basic-leucine zipper domain
PfamPF001703.2E-21199261IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093201264IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-10202257No hitNo description
CDDcd147021.90E-17204254No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASSAASPSS SKSDDERRQD GDRDTRDPAA SSAVAAAQTH AEWAASMQAY YAAAAAAAGG  60
HPYAWPPPQS VPPMAGCAVP SAAAGEGKSK RKTSGGPSGE DSSGSGDGGS EDSSERRDDA  120
DEKGWSPAKW RKLGHPDIEG ETSQAAAMSE QHPVKAAPNL NIGMDIWSNS TMAAMPSGQA  180
EVNAGTSLRR DKVLSQMDER ELKRERRKQS NRESARRSRL RKQQECEELS QKVTELTAVN  240
STLRTELDKL KKDCEDMEAE NSQLMDEMAQ SEGSSVITTL SIKIDTSKDR HGSSSQLNKR  300
TNDDSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221RRSRLRK
2215222RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022501e-118AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879816.11e-169DNA-binding protein EMBP-1 isoform X5
SwissprotP250322e-50EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0E0DZX70.0A0A0E0DZX7_9ORYZ; Uncharacterized protein
STRINGOMERI06G10440.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.24e-30G-box binding factor 1