PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G20460.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

VOZ

Protein Properties

Length: 648aa MW: 70696.1 Da PI: 5.6609

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G20460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	420.1	3.7e-129	315	532	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 p+ps++lgpkcalwdc rp++gs+++q+yc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaalsakvqgk+vgip+cegaat+kspwna+ OMERI05G20460.1 315 PSPSQYLGPKCALWDCGRPVRGSDECQHYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALSAKVQGKNVGIPVCEGAATTKSPWNAP 408 89************************************9799********************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 elfdlsllege++rewlffd+prraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eye+n++dalalyrle+ OMERI05G20460.1 409 ELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYETNDSDALALYRLEY 502 ****************************************************************************************** PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 k++d+k+s+k+k+++++l+++q++++rl+a OMERI05G20460.1 503 KSSDTKRSVKSKLASSPLSEIQQQMVRLSA 532 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MAGDPAGGGG GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD 60 AALLEEQVHH MLREWRAELN VPSPASSLQA IPPNPSFLLT CANSQSQGNN REASDPPSET 120 LRLLQLAGAE EEDDATSKLV MPRSPMPMQS SHEGHNLSPV LQGGAAELMV PRSPLQQMPS 180 SHQSHGHGQD GGQNLQGEAV MGSTAAAAPH LGQGMQGDCG GMAGVTNAMF HDQLYYIDHE 240 LNIDDFLQDD DYKINLPGSN PDGPNTMQGI GQLEHQQYNL PLDLPPNSFV DANNSAQSSG 300 DVFFHMSDLL TTMCPSPSQY LGPKCALWDC GRPVRGSDEC QHYCNPYHAG LALNDDGLLG 360 TRPVMRPRGI DLKDGPLFAA LSAKVQGKNV GIPVCEGAAT TKSPWNAPEL FDLSLLEGES 420 LREWLFFDTP RRAFDSGNRK QRSLPDYNGR GWHESRKQVM KDFGGLKRSY YMDPQPSSNY 480 EWHLFEYETN DSDALALYRL EYKSSDTKRS VKSKLASSPL SEIQQQMVRL SADSPVESKR 540 TARSRAKANQ KDNNSNAYPA LNTPVQVSAS NAHQTMSVNT PDQVNVSNAY QTMPLNTPNQ 600 PGPSNAYHAA SQMDQMTFLD GSVVYGPHLP YGYSTERSDF YWNPSDGT

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MAGDPAGGGG GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD  60
AALLEEQVHH MLREWRAELN VPSPASSLQA IPPNPSFLLT CANSQSQGNN REASDPPSET  120
LRLLQLAGAE EEDDATSKLV MPRSPMPMQS SHEGHNLSPV LQGGAAELMV PRSPLQQMPS  180
SHQSHGHGQD GGQNLQGEAV MGSTAAAAPH LGQGMQGDCG GMAGVTNAMF HDQLYYIDHE  240
LNIDDFLQDD DYKINLPGSN PDGPNTMQGI GQLEHQQYNL PLDLPPNSFV DANNSAQSSG  300
DVFFHMSDLL TTMCPSPSQY LGPKCALWDC GRPVRGSDEC QHYCNPYHAG LALNDDGLLG  360
TRPVMRPRGI DLKDGPLFAA LSAKVQGKNV GIPVCEGAAT TKSPWNAPEL FDLSLLEGES  420
LREWLFFDTP RRAFDSGNRK QRSLPDYNGR GWHESRKQVM KDFGGLKRSY YMDPQPSSNY  480
EWHLFEYETN DSDALALYRL EYKSSDTKRS VKSKLASSPL SEIQQQMVRL SADSPVESKR  540
TARSRAKANQ KDNNSNAYPA LNTPVQVSAS NAHQTMSVNT PDQVNVSNAY QTMPLNTPNQ  600
PGPSNAYHAA SQMDQMTFLD GSVVYGPHLP YGYSTERSDF YWNPSDGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069076	0.0	AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640409.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-114	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0E0DTW3	0.0	A0A0E0DTW3_9ORYZ; Uncharacterized protein
STRING	OMERI05G19650.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-111	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]