PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G20390.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 682aa    MW: 73469.4 Da    PI: 6.9235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G20390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24128229199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +   s++l+  d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +
  OMERI05G20390.2 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGD 218
                      99****************************864443.4569************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++v+r+
  OMERI05G20390.2 219 DGQLRLGVRRA 229
                      88899999986 PP
2Auxin_resp106.62.9e-35254334182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRfk+ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L
  OMERI05G20390.2 254 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFKVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 334
                      578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-42117266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38123231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-22126228No hitNo description
SMARTSM010195.3E-23128230IPR003340B3 DNA binding domain
PfamPF023621.2E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887128230IPR003340B3 DNA binding domain
PfamPF065071.2E-27255334IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MGIDLNTVEE EAEEGAAVVV CGELWHACAG PGVALPRRGS ALVYLPQAHL AAAGGEVPPA  60
GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGERN FREGGGGDGA GEMEGCDAEK  120
KPRMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK TVRPSQELIA VDLHGTQWKF  180
RHIYRGQPRR HLLTTGWSSF VNRKKLVSGD AVLFLRGDDG QLRLGVRRAV QLRNEALFEP  240
VNSSDSKLRI LSSVASSLEN KSVFHICFNP RSGASEFIVP YWRLLKSLNH PFSIGMRFKV  300
CYESEDANER SAGLISGISE VDPIRWPGSR WKCLLVRWDD STDSSHQNRV SPWEIERVGG  360
SVSVTHSLSS GSKRTKLHFP QGSLDTPFLN GNGHPDSMGT ENFHRVLQGQ EFRGSRSHGV  420
VCSESPGVPN FQSPDNRRFS ADMRGYMMPA SGPPQRNTQF TYQPVGFSES LGFPEVLQGQ  480
EMSQVVPLFR GATFGARTQN DRVVSANSVH RSAAQSGLLA STQGHPITQF TLSSSKVSSP  540
SSVLMFNQAT APNHETIGGT NNKGMHGSQF ASQEMISETV TWPGTQCQMP SEITSNQFAL  600
ARIPAPPSGA ESGSPKRDVG RSSCRLFGFS LTGNMLGEDG EGLEDGAIEA GCENPPVLEL  660
FGHSHSTPGA LHALCAAAPL GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-952035619353Auxin response factor 1
4ldy_B4e-952035619353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679270.0AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637659.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0E0DTV70.0A0A0E0DTV7_9ORYZ; Auxin response factor
STRINGOGLUM05G23980.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-136ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]