PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G19500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 640aa    MW: 69450.3 Da    PI: 9.4176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G19500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06123143425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + C f+a+ G Ck G +C+F H
  OMERI05G19500.1 123 RTCTFYAQ-GRCKNGKSCTFLH 143
                      78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-5118144IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605119146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6119144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGFAGVIAAE KKPSLQLHGD  60
DKYQKKAGND PVPPTIDDTS KTGGLHMHGG HVSQSPPDSN ALSSQRFGSS SPGGDMKNKT  120
RKRTCTFYAQ GRCKNGKSCT FLHEGEVSGS DNQGYGNHRG TGEGSEIQHS SSSKERQFKN  180
SAGSSQHEIY RTLVHAYGED NRGLTHPVVK HSCNMLKASH GFKIGGSLTA NPTNEVVQLP  240
VVQEKNHEPY FMGHQISLGT NSCLNDMGAY SRLCLDGGKL RFEVAKGDGP RDSLSRSYLE  300
KNPLKPDYRY QPFDSTISLD PHQYSKKSSA YGGVTENLPH KHQEEKSSSH ASYSLNSYTG  360
FRKPGHDSSD FFLVNQSLRA TSHHGTLPLC QLTPDKDASH HKGADFDKGG TSRSTLPQPV  420
VALAGKLSPI KDEVWITSVP FVPSFNFPDF PGSTSPSKSQ YDPLVDSIDP PKVESLNNLK  480
TSNISCSISS QHVDTNVIRG GSLEKPLTFA DKLARNVSAK GSNDFGLISF DRGHSSSLDG  540
DNRVKTCERK NDASLNNEKS DFRFHLVEHV KELVKPIWKE GNLSKEAHKL IVKKSVDKIF  600
ASLEPNQMPE TEKAITTYIT ASAPKIEKLV KAYVDRHRTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0E0DTI20.0A0A0E0DTI2_9ORYZ; Uncharacterized protein
STRINGONIVA05G22280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-14C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]