PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G05680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 401aa    MW: 42582.7 Da    PI: 7.4204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G05680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08121141526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C FaHg
  OMERI05G05680.1 121 ACPDFRK-GGCKRGDACEFAHG 141
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5121143IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7121141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258151175IPR000571Zinc finger, CCCH-type
SMARTSM0035612151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQHVASPV SGVEGGGGRE SEVVAAPYHL LDALRHYLPS NEAAAAEEEE  60
EAAAVAAAVD AYACDEFRMY EFKVRRCARG RSHDWTECPF AHPGEKARRR DPRRYCYSGT  120
ACPDFRKGGC KRGDACEFAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPDQLRVV  180
PPSQQHGSNS PRGCGAGGAG PAASPLAESY DGSPLRRQAF ESYLTKSIMS SSPTSTLVSP  240
PRSPPSESPP LSPDAAGALR RGAWAGVGSP VNDVLVSLRQ LRLGSPRSAP SCASFLPAGY  300
QYGSPKSPAA AAAAAALYSL PSTPTRPSPV TVTTASGATV TVEPLDLGLI EEEQPMERVE  360
SGRALREKVF ERLSKEATVS TDAATAAAAA PDVGWVSNLI N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0E0DN370.0A0A0E0DN37_9ORYZ; Uncharacterized protein
STRINGONIVA05G06810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.26e-71C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]