PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G02210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 254aa    MW: 28458.4 Da    PI: 7.1757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G02210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28114172259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  OMERI05G02210.1 114 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 172
                      69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-32106173IPR003657WRKY domain
SuperFamilySSF1182901.83E-24108172IPR003657WRKY domain
SMARTSM007744.2E-33113173IPR003657WRKY domain
PROSITE profilePS5081128.105115174IPR003657WRKY domain
PfamPF031067.8E-24115172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKSSKAEREG DQQLAPAFFS QLVVWCWHLA VTISSHCSLT YFVPFRVIVP LLLSLHQLYL  60
FFLLLPYACV VSVAEMIKMS SMKADGSVPK RRRQDVQKVV VSLKDHKVEQ GPPADSWSWR  120
KYGQKPIKGS PHPRGYYKCS SYRGCPARKQ VDKCRNDASL LIITYTSDHN HDNYATTTTN  180
SVQEQAHNPD TSDALSNGMS LAEVVTVASS KLPSEEESCD FFDELEELPV SASPLPSLSF  240
MVQECSFSDA RTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-171151721672WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364660.0CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-127probable WRKY transcription factor 69
TrEMBLA0A0E0DLJ30.0A0A0E0DLJ3_9ORYZ; Uncharacterized protein
STRINGOMERI05G02180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-33WRKY DNA-binding protein 65