PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G02170.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 148aa MW: 15924.9 Da PI: 9.9973

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G02170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.4	7.7e-14	24	83	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+aeN + ++ + e +k++ e+ OMERI05G02170.1 24 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGEN 83 5678999**********************************9999999998888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-18	21	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	23	86	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-11	23	78	No hit	No description
SuperFamily	SSF57959	1.19E-10	25	77	No hit	No description
Pfam	PF00170	7.8E-10	25	79	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	28	43	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSSPSRRSSS PESNTSGGGG GADERKRKRM LSNRESARRS RARKQQRLEE LIAEAARLQA 60 ENARVEAQIG AYAGELSKVD GENAVLRARH GELAGRLQAL GGVLEILQVA GAPVDIPEIP 120 DDPLLRPWQP PFAAQPIVAT AMADAFQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRSRARKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841856	0.0	CT841856.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105C20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639544.1	1e-100	ocs element-binding factor 1
Swissprot	P24068	4e-34	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A0E0DLI6	1e-100	A0A0E0DLI6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0PH16	1e-100	A0A0E0PH16_ORYRU; Uncharacterized protein
STRING	OMERI05G02150.1	1e-100	(Oryza meridionalis)
STRING	ORUFI05G02170.1	1e-100	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-24	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]