PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G02070.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 372aa MW: 41515.1 Da PI: 6.8569

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G02070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.8	8.1e-20	54	118	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf r+p qCk+kw+nl +r+k ++ OMERI05G02070.1 54 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGTE 118 7*************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.79E-21	53	118	No hit	No description
Pfam	PF13837	1.0E-14	54	117	No hit	No description
PROSITE profile	PS50090	7.062	55	111	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPLL PADPPSLERE RLPQWSHAET 60 AAFLAIRADL DHSFLSTKRN KALWEAASAR LHALGFARTP DQCKSKWKNL VTRFKGTEGA 120 AAVAAAGTDQ MQGGQGGGGA AARGSSSSFP FHDELRRIFD ARVERARALE RKKVKGKDPD 180 DEHDGGGDGD EDEEEEADQQ VDEEDDGASG DTTRAGSKKR RRKAAAAAAA RRTGSAGGVE 240 GEVEAMLREF MRRQIEMEER WMEAAEAREA ERRAREEEWR TAMVALGEER LALVRRWRER 300 EDAWRARAEE REERRHQLVA ALLAKLGAGD ATMHCREARA PRPADTFAIY KAMRGWSRNY 360 KGFATEMHQT SY

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPLL PADPPSLERE RLPQWSHAET  60
AAFLAIRADL DHSFLSTKRN KALWEAASAR LHALGFARTP DQCKSKWKNL VTRFKGTEGA  120
AAVAAAGTDQ MQGGQGGGGA AARGSSSSFP FHDELRRIFD ARVERARALE RKKVKGKDPD  180
DEHDGGGDGD EDEEEEADQQ VDEEDDGASG DTTRAGSKKR RRKAAAAAAA RRTGSAGGVE  240
GEVEAMLREF MRRQIEMEER WMEAAEAREA ERRAREEEWR TAMVALGEER LALVRRWRER  300
EDAWRARAEE REERRHQLVA ALLAKLGAGD ATMHCREARA PRPADTFAIY KAMRGWSRNY  360
KGFATEMHQT SY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	KKRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130598	0.0	AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637590.1	1e-139	trihelix transcription factor GT-3b
Refseq	XP_015637591.1	1e-139	trihelix transcription factor GT-3b
TrEMBL	A0A0E0DLG4	0.0	A0A0E0DLG4_9ORYZ; Uncharacterized protein
STRING	OMERI05G02050.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	5e-26	Trihelix family protein