PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G01600.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 438aa    MW: 49902.7 Da    PI: 8.6164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G01600.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.6e-0782102323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cg sF+ + +Lk+H+++H
  OMERI05G01600.2  82 CKVCGASFKKPAHLKQHMQSH 102
                      *******************99 PP
2zf-C2H218.26.7e-06166190123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+sr+++L+rH+ +H
  OMERI05G01600.2 166 FSCHvdGCPFSYSRRDHLNRHLLSH 190
                      89********************999 PP
3zf-C2H211.10.0013195220123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  OMERI05G01600.2 195 FACPveGCNRKFTIKGNIQRHVQEmH 220
                      78*******************98877 PP
4zf-C2H220.51.2e-06232256123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  OMERI05G01600.2 232 FICPeeNCGKTFKYASKLQKHEESH 256
                      78*******************9988 PP
5zf-C2H218.17.6e-06323347223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL++H +  H
  OMERI05G01600.2 323 RCHfkDCKLSFSKKSNLVKHVKAvH 347
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-631102No hitNo description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
SMARTSM003550.0180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88780107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF128742.3E-482102No hitNo description
Gene3DG3DSA:3.30.160.604.3E-582103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-5157192No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8163192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141166195IPR007087Zinc finger, C2H2
SMARTSM003550.0018166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-7193221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.74E-6193221No hitNo description
PROSITE profilePS5015710.866195225IPR007087Zinc finger, C2H2
SMARTSM003550.0015195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-7228256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-5229258No hitNo description
PROSITE profilePS5015711.24232256IPR007087Zinc finger, C2H2
SMARTSM003550.0018232256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234256IPR007087Zinc finger, C2H2
SMARTSM003557.8264289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266289IPR007087Zinc finger, C2H2
SMARTSM0035513292313IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.0E-7303364No hitNo description
SMARTSM003550.012322347IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05322352IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-5323346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280324347IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6347375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.5353379IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974353384IPR007087Zinc finger, C2H2
PROSITE patternPS000280355379IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGSVELGAEE GEVAGGEGES KRAAPPARDI RQYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETRKEMDR DCKVCGASFK KPAHLKQHMQ SHSLEHWIPE NSKMREGLEW  120
TSTRMGRPFW EAPSRMPLSR SSSGWGDSPE KLHQECLVHT PFQRPFSCHV DGCPFSYSRR  180
DHLNRHLLSH QGKLFACPVE GCNRKFTIKG NIQRHVQEMH KDGSPCESKK EFICPEENCG  240
KTFKYASKLQ KHEESHVKLD YSEVICCEPG CMKAFTNLEC LKAHNKSCHQ HVVCDVCGTK  300
QLKKNFKRHQ RMHEGSCVTE RVRCHFKDCK LSFSKKSNLV KHVKAVHEQK RPFVCGFSGC  360
GKSFSYKHVR DNHEKSSAHV YVQANFEEID GDRPRQAGGR KRKAIPVESL MRKRVAAPDD  420
DAPACDDGTE YLRWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-1316328640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-1316328640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
TrEMBLA0A0E0DLA30.0A0A0E0DLA3_9ORYZ; Uncharacterized protein
STRINGONIVA05G01580.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-90transcription factor IIIA