PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G01360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 283aa    MW: 30049.8 Da    PI: 8.2511
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G01360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-202584357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  OMERI05G01360.1 25 TRWCPTPEQLMMLEEMYRGgLRTPNAAQIQQITAHLssygRIEGKNVFYWFQNHKARDRQ 84
                     8*****************99*************************************996 PP
2Wus_type_Homeobox118.62.8e-382385264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
    OMERI05G01360.1 23 STTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSSYGRIEGKNVFYWFQNHKARDRQK 85
                       579***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.752085IPR001356Homeobox domain
SMARTSM003891.0E-42289IPR001356Homeobox domain
SuperFamilySSF466896.42E-112488IPR009057Homeodomain-like
CDDcd000868.05E-52585No hitNo description
PfamPF000461.2E-172584IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-72584IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAPAVQQQQQ SSGGGSAAAA VGSTTRWCPT PEQLMMLEEM YRGGLRTPNA AQIQQITAHL  60
SSYGRIEGKN VFYWFQNHKA RDRQKLRRRL CISHHLLSCA HYYAHAHHHH HHHLAAVPPP  120
PLLPPLHPSS SSCGAALDHA NNSLLSPTSA ITPTAAAAAA AYTTSYYYPF TAAAAPPPPR  180
TSPAASPLYH YNNQGGGGVV LPAAEAIGRS SSSSDYSLGK LVDNFGVALE EAFPTQPQTP  240
ATTMTMTAVV DTTAAAAAGG FCRPLKTLDL FPGGLKEEQH DVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902440.0AM490244.1 Oryza sativa mRNA for putative wuschel homeobox protein (wox3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639083.11e-100putative WUSCHEL-related homeobox 2
SwissprotA2XZR31e-104WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A0E0DL760.0A0A0E0DL76_9ORYZ; Uncharacterized protein
STRINGOMERI05G01350.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-39WOX family protein