PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 384aa    MW: 40745.5 Da    PI: 9.4602
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.43.4e-1763149272
         trihelix   2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                      Wt +e+l Li+a+r +++r    g                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ +
  OMERI04G24590.1  63 WTLHETLILITAKRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRVA 149
                      *************966666553122345666677777777*****************************************999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.60955135IPR017877Myb-like domain
PfamPF138377.4E-1162146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAAAS PLALLRAHGH GHLTPPSAAT GPAPPPPSPA SGSAPRDYRK  60
GNWTLHETLI LITAKRLDDD RRAGVGGAAA GGGGAGSPPT PRSAEQRWKW VENYCWKNGC  120
LRSQNQCNDK WDNLLRDYKK VRDYESRVAA AASAAAGGAA AANSVPLPSY WSMERHERKD  180
CNLPTNLAPE VYDALSEVLS RRAARRGGAT IAPTPPPPPL ALPPPPPPSP PKPLVAQQHH  240
HHGHHHHPPP PQPPPSSLQL PPAVVAPPPA SVSAEEMSGS SESGEEEEGS GGEPEAKRRR  300
LSRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA  360
AVNSLSSAIH ALVSDHRSGD SSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2032430.0EF203243.1 Oryza rufipogon shattering 1 (SHA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-114trihelix transcription factor ASR3
TrEMBLA0A0E0DJX50.0A0A0E0DJX5_9ORYZ; Uncharacterized protein
STRINGOMERI04G24210.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-42Trihelix family protein