PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G23390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 418aa    MW: 45119.7 Da    PI: 7.8038
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G23390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-40186264178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  OMERI04G23390.1 186 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 264
                      6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33181249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291184262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-37185265IPR004333Transcription factor, SBP-box
PfamPF031108.7E-31187261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMNVPSAAAA NSCDDFGYNA TPPPPPSLLP IMDQDGGGGG GGGIQRDHHH HHHQQQLGYN  60
LEPSSLALLP PSNAAAAAAA HHATIAHASP HDLLQFYPTS HYLAAGAAGG GGNPYSHFTA  120
AAAGSTFQSY YQQPPQAAPE YYFPTLVSSA EENMASFAAT QLGLNLGYRT YFPPRGGYTY  180
GHHPPRCQAE GCKADLSSAK RYHRRHKVCE HHSKAPVVVT AGGLHQRFCQ QCSRFHLLDE  240
FDDAKKSCRK RLADHNRRRR KSKPSDGEHS GEKRRAQANK SAATKDKAGS SSKNAGIGDG  300
FETQLLGGAH MSKDQDQAMD LGEVVKEAVD PKGKASMQQQ QQQAHHGIHQ QSHQQHGFPF  360
PSSSGSCLFP QSQGAVSSTD TSNIAQVQEP SLAFHQQHHQ HSNILQLGQA MFDLDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271872611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256274RRRRKSKPSDGEHSGEKRR
2257262RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769910.0AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare.
GenBankAK0681040.0AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence.
GenBankJX4627830.0JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds.
GenBankJX4627840.0JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634037.10.0squamosa promoter-binding-like protein 8
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0E0DJD00.0A0A0E0DJD0_9ORYZ; Uncharacterized protein
STRINGOPUNC04G25460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-42squamosa promoter binding protein-like 8