PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G16410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 463aa    MW: 49692.2 Da    PI: 8.6107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19211261256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OMERI04G16410.1 211 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 261
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-32210269No hitNo description
SMARTSM003802.5E-38211274IPR001471AP2/ERF domain
PROSITE profilePS5103222.998211268IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-23211270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-32211269IPR001471AP2/ERF domain
PfamPF008472.8E-12212261IPR001471AP2/ERF domain
PRINTSPR003678.4E-11212223IPR001471AP2/ERF domain
PRINTSPR003678.4E-11234250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDAPSGESGG GGGGGRRWKG KGVTPIQPRR QLGTVLEDSS AALLRPLKKI GRSPDRLLRS  60
ASSLSTSSSA PPSPRSSSAS DAPVRVISSS PSSPSPPSAR HIFPFAYEVS TTTVGGSPRL  120
HPLSWQQSSM SQPASPQQQQ QPLQHQQMIS FGASPPCSTT QFVVPENAQQ QQMLLRYWSE  180
ALNLSPRGGP GGVPPWLYQQ LLRVPPPPQK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT  240
FDTAEDAAMA YDREAFKLRG ENARLNFPDR FLGKGRAGGS GRTSVSSSAA AAASCSSSSP  300
SPPETPDEAN MQQQAPQQRE QRDTAGVSME KKQPQPPAPT SRQEDCSGGD AASPYPAEML  360
HAPAASGGMW VAPDESWFST WGPGSSFWDD YDMDSARGLF LHPRFTGDET SMDHSGTQAT  420
VPAVAATAAG MSMPCDDVPV TSSSSDLPPQ GTPQTPTFMW KED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20210270465ATERF1
3gcc_A4e-20210270465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634091.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0E0DGG90.0A0A0E0DGG9_9ORYZ; Uncharacterized protein
STRINGORUFI04G20990.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-35ERF family protein