PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G13540.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 996aa    MW: 103056 Da    PI: 6.5337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G13540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30513570260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  OMERI04G13540.1 513 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 570
                      8****************************************.***************85 PP
2WRKY104.74.9e-33749807159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  OMERI04G13540.1 749 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 807
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27502571IPR003657WRKY domain
PROSITE profilePS5081123.571507571IPR003657WRKY domain
SuperFamilySSF1182901.44E-24509571IPR003657WRKY domain
SMARTSM007746.1E-33512570IPR003657WRKY domain
PfamPF031062.5E-23513569IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36734809IPR003657WRKY domain
SuperFamilySSF1182908.63E-29741809IPR003657WRKY domain
PROSITE profilePS5081137.7744809IPR003657WRKY domain
SMARTSM007749.2E-39749808IPR003657WRKY domain
PfamPF031066.4E-25750807IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MTTTTATLDP PPPPLLIAGS LLDDDRDAGS VVASFPRWLP SGVRIHRRLP SSLGRGGEAA  60
TRRRGSGSFP DDDVGATMDG GGDAAVPLPM AMTTATTTAP TPVEAAADGG GEPSSAGGGG  120
QQWRCIFFLF AEMFFYRRVN LLHAKILSAY KNHLFSQALA CREDEWIIEK LVVIAARRSS  180
FVSEESLCSV PAAALVSLAI AHLAFSPMLV YGVLDRLCSV CHLGEMEGDI AMEEWKESNH  240
RGADYLMTMP MQNFLADAFP PPELLEGEGG AVGFEKHGLS VAVGSPPPPE DGCSPLPLTP  300
QFGSGGGGGS LADRRARGGF SNVARISVPY NQPAAAAADV SSAGAPSPYV TIPPGLSPTT  360
LLESPVFFSN AMGQASPTTG KLHMLGGAND SNPIRFESPP IEEGSGAFSF KPLNLASSHY  420
AAAEKTKSLP NNQHQSLPIS VKTEATSIQT AQDEAAANQL MQPQFNGGKL SRAAPDNGGD  480
GECQPAEGDA KGDSSSGAVA VVAAAAAAAA VAEDGYSWRK YGQKQVKHSE YPRSYYKCTH  540
ASCAVKKKVE RSHEGHVTEI IYKGTHNHPK PAASRRPPVH PPPPPTTTTP TPTPLPPGDA  600
QADHAPDGGG GSTPAGAGQA GAEWHNGGVV GGEGLDATSS PSVPGELCES TASMQVHDGA  660
AAAQLGESPE GVDVTSAVSD EVDRDDKAAH VLPLAGGVGV AAAADDESDE LERKRRKLDS  720
CATMDMSTAS RAVREPRVVI QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTHPGC  780
LVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNSGHPAGS APPGGGGAGS SSQPHGVGVG  840
GRRPEVPSVQ ESLMRLGGGC GAAPFPPHFG LHLPPPPPRD PLAPMSNFPY SLGHAPSPAL  900
RGLPPPPSPP PSASALAVAG LGGVVEGLKY PMLAPPSVHS LLRHRQGGGM EAVVVPKAEV  960
KQEAMPPAAA AAVAGAGRSA AVYQQAMSRV SLGNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36495810278Probable WRKY transcription factor 4
2lex_A7e-36495810278Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A0E0DF810.0A0A0E0DF81_9ORYZ; Uncharacterized protein
STRINGOMERI04G12740.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-94WRKY DNA-binding protein 2