PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G11780.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 290aa    MW: 29391.7 Da    PI: 8.1795
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G11780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer871.9e-272775558
      ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr  +
  OMERI04G11780.1 27 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAAA 75
                     7*************************9.....799****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-222773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-242773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-212772IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482873IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.78E-18158228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28162229IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26170227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDHLSLVPYE GGSAGGGGGG GGGGGGKYKE CMRNHAAAMG GQAFDGCGEY MPASPDSLKC  60
AACGCHRSFH RRAAAAAAPG IGGPVFFRPP PPPQPHSHSH HAALQGFLPS SVPPPPQLAL  120
PYHAVPAAAW HHAAAAAAGR AGSETPPRMD DFGPGSAGGS GSGGGGIFGR KRFRTKFTPE  180
QKERMREFAE KQGWRINRND DGALDRFCVE IGVKRHVLKV WMHNHKNQLA SSPTSAAAAA  240
AAAGVMNPGA GIGLGTSVGV GGDGDGDDDD TDDSPPRAAV SSPSPSPISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241712361880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551530.0CR855153.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete sequence.
GenBankCR8551880.0CR855188.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0102D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635194.11e-100zinc-finger homeodomain protein 8
SwissprotQ7X7N31e-101ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0E0DEF90.0A0A0E0DEF9_9ORYZ; Uncharacterized protein
STRINGOMERI04G10740.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-21homeobox protein 33