PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G07770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 322aa    MW: 36461.6 Da    PI: 6.4357
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G07770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.84.8e-081441742555
          G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      + A Pk+i+ +m+v+ + ++++  HLQk+Rl
  OMERI04G07770.1 144 QDASPKQIKMIMDVDNIDRKQISTHLQKHRL 174
                      579***************************8 PP
2Response_reg44.86.8e-16151222107
                      EEE.SSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 liv.dDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +++ +D+  v + +  ++++ ++  v++++++ +ale l+++   + l+l Di+m +m+G+e+lk  re ++++++i+++ + +  ++++++++
  OMERI04G07770.1  15 MVIdEDKCHVDSTCSMICTQLNF-CVTVFTSPIKALEFLQNQAkgVRLVLADIQMEEMNGFEFLKVARELHKSIQVIMMSIETTIYTMKRCVQL 107
                      67724444555555666669***.***************999999************************************************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga+  + Kp d   +
  OMERI04G07770.1 108 GAQFLVKKPLDVVTI 122
                      *********987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.2E-1911129IPR011006CheY-like superfamily
SMARTSM004486.6E-812126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.69413130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.5E-2014129No hitNo description
CDDcd001561.19E-1215114No hitNo description
PfamPF000722.0E-1416122IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.601.4E-6144178IPR009057Homeodomain-like
SuperFamilySSF466895.56E-5144178IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAQNEGIPTG RLSAMVIDED KCHVDSTCSM ICTQLNFCVT VFTSPIKALE FLQNQAKGVR  60
LVLADIQMEE MNGFEFLKVA RELHKSIQVI MMSIETTIYT MKRCVQLGAQ FLVKKPLDVV  120
TIQNLWQHLD IKVLKMEKIK DMLQDASPKQ IKMIMDVDNI DRKQISTHLQ KHRLQLKKKL  180
SKASFTKGSN EDTSNPSAKN HLTCRTMTLQ PHPYTNQPAE TTVQIHSEDV EHDDVYDAMR  240
RALRDGTAFD ESKYSSDPFD KANAIDSFGD HYQVAVVLAT PHNVDYTQEI MNKVTTSDDV  300
QVTRGGKATV SRLVDYSDSD ND
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149602e-90AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-90CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880730.11e-154two-component response regulator ORR29
SwissprotQ7XKS90.0ORR28_ORYSJ; Two-component response regulator ORR28
TrEMBLA0A0E0DCS50.0A0A0E0DCS5_9ORYZ; Uncharacterized protein
STRINGOMERI04G06870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.16e-11response regulator 14