PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G07740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 444aa    MW: 49814.8 Da    PI: 6.4503
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G07740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.73.4e-15227276455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a++ L G++ A Pk+i+++m+v+ +   +++ HLQk+Rl
  OMERI04G07740.1 227 LMWTPHLQKKFLHALQIL-GKD-ASPKNIKKIMGVDNIDCRQIATHLQKHRL 276
                      78****************.665.****************************8 PP
2Response_reg50.51.1e-17151232108
                      EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +++d+++  ++    +l+ + ++ +v++++++ +al+ l+++   +Dl+l D+ m +m+G+++lk  re ++++++i+++++ ++ ++++++k+
  OMERI04G07740.1  15 MVIDEDKCHADSTICMLSaELNF-SVTVFTSPIKALDFLQNHAegVDLVLADVHMEEMNGFDFLKVARELHKSIQVIMMSTETAMYTMKRCVKL 107
                      67877777777777788879999.******************999************************************************* PP

                      TESEEEESS--HHHHH CS
     Response_reg  93 GakdflsKpfdpeelv 108
                      Ga+  + Kp d + + 
  OMERI04G07740.1 108 GAQFLVNKPLDVRTIK 123
                      **********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-2211129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-2212129No hitNo description
SMARTSM004482.3E-1012126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.76213130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.16E-1415129No hitNo description
PfamPF000726.7E-1615124IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466893.23E-14221280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-15222279IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-15227277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAQKEGLPAG RLSAMVIDED KCHADSTICM LSAELNFSVT VFTSPIKALD FLQNHAEGVD  60
LVLADVHMEE MNGFDFLKVA RELHKSIQVI MMSTETAMYT MKRCVKLGAQ FLVNKPLDVR  120
TIKNLWQYVD LKVLRMEKIK DLLQVMSTET AMYTMKRCVK LGAQFLVNKP LDVRTIKNLW  180
QYVDLKVLRM EKIKDLLQGI GDESTCANET NSLAENPKND TKKKYYLMWT PHLQKKFLHA  240
LQILGKDASP KNIKKIMGVD NIDCRQIATH LQKHRLRLTK DLKKASFTPD TSKDESNSRI  300
GPTESHHVCR NASTLQPRSN TQPTETTMQI LSEDAEYDDV YAAMRRALQY GIVFDESKHS  360
SDPSGDEDEQ VVVGGDQDGC ADEANDIDSS GDHHQVAAIV TKPCNANASQ EIINKTTNSD  420
GMQATKGSKA AVFRLVDYSE SDSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629630.0AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880730.10.0two-component response regulator ORR29
SwissprotQ7XS690.0ORR29_ORYSJ; Two-component response regulator ORR29
TrEMBLA0A0E0DCS20.0A0A0E0DCS2_9ORYZ; Uncharacterized protein
STRINGOMERI04G06840.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.17e-20response regulator 14