PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 375aa    MW: 39171.9 Da    PI: 7.7321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07207229123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OMERI04G02190.1 207 HYCQVCGKGFKRDANLRMHMRAH 229
                      68*******************99 PP
2zf-C2H212.90.00034293316123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k F   s+L++H + +
  OMERI04G02190.1 293 YVCGRCGgKQFAVLSDLRTHEKHC 316
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180184196IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF576674.85E-6206233No hitNo description
PROSITE profilePS5015712.653207234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-6207233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
SMARTSM00355110255288IPR015880Zinc finger, C2H2-like
SMARTSM0035530293315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA AAAASDDVLA YHVGVLRDKV QQLEPLVGMV  60
VVSPAAPHGQ LRRDAAAMAA SSACSVLQEI TAAASAVAHR LEQASAASSA SFRRGVAFAD  120
DAHAAGGEQM FAAGAHGGGQ GGDDEAGASL FHHHGPPAVG APTVFRAGAT TTAAASSSGG  180
GDDDGDGDGE VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALT  240
STGAGMRAAA RRCSYSCPAE GCRWNRRHPR FQALKSVVCA KNHYRRSHCP KMYVCGRCGG  300
KQFAVLSDLR THEKHCGELR WLCSCGTFFS RKDKLMGHVA LFAAGHAPVP VAPEASPSTT  360
TTGTTTDRSR TGLID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4421130.0AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence.
GenBankCT8379280.0CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0DAN20.0A0A0E0DAN2_9ORYZ; Uncharacterized protein
STRINGOMERI04G01980.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.19e-79C2H2 family protein