PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 27930.7 Da    PI: 7.079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11145192455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  OMERI03G35020.1 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 192
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.82E-11139196No hitNo description
SuperFamilySSF474594.32E-18139208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18141209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDPAPTLAAE LWRPPHLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE  60
APALEDDSSR IVSTSGGGGG QDLTDSEAKR FKASKSSGDN SSLRTEAETD SRNASKSGDQ  120
NPPPPEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKASV  180
LDEIINYIQA LQRQVEFLSM KLEAVNAHVN NGIEAFPPKD FGAQVYNTAP GLTFDPQTPR  240
EYAQGSTPSE WLHMQIGGTY ERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-155transcription factor BHLH089-like
SwissprotQ84T081e-156BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0E0D8F90.0A0A0E0D8F9_9ORYZ; Uncharacterized protein
STRINGORGLA03G0344800.11e-162(Oryza glaberrima)
STRINGOBART03G37850.11e-162(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-72BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]