PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G33230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 41455.6 Da PI: 7.0294 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 39 | 172 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s OMERI03G33230.1 39 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 131 69***************************.89***************445556889************************************** PP NAM 95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl OMERI03G33230.1 132 AaaavnnnSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 172 988888777778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-55 | 37 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 38 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-25 | 40 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MVTSKEFARD QAAMDQKIKS DDGEVVLAGH EEEDGDVVLP GFRFHPTDEE LVTFYLRRKV 60 ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW 120 KATGIDRPIY SAAAAVNNNS GESIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPAIAAAD 180 ASPCMQEAEV WTICRIFKRS ITYRKQQQQQ AWRPPAPAPA TVTVKAPPPG DSSSNTGSFE 240 SDGGGDEFMN CGLAPAISQQ QQQHGGRHQM MSTMSCNGGY FFNDAIHHNH SHHKLHSQWG 300 SLQMALPAPE PKPELEQKPL SSPAMTIAFH QNDHGFPAAA ADFYKDGYLE EIARMMEVAD 360 PSPTGFYDCR Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 40 | 205 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 40 | 205 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 40 | 205 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 40 | 205 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 40 | 205 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-47 | 40 | 205 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 40 | 205 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073539 | 0.0 | AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628846.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 3e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0E0D7L8 | 0.0 | A0A0E0D7L8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G32560.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 8e-83 | NAC domain containing protein 42 |