PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G23740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 919aa MW: 105404 Da PI: 9.544 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.2 | 2.1e-20 | 59 | 148 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ +++ ++++p kfae++ + + t++l+ +g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v OMERI03G23740.1 59 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKACNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYIGNSQF--EV 143 56666..445555.6********888655..4459***************..**************************************..99 PP EEE-S CS B3 95 kvfrk 99 k+f+ OMERI03G23740.1 144 KIFDP 148 99986 PP | |||||||
2 | B3 | 65.4 | 8.7e-21 | 343 | 424 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le +sg +++v++ +kk + v+++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ OMERI03G23740.1 343 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVFGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 424 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
3 | B3 | 55.5 | 1e-17 | 617 | 704 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++d+ el+v OMERI03G23740.1 617 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQLGDFLVFSYDE--ISELKVL 701 5555..44444.57********555666..66789999999********..*******************************975..4445888 PP EE- CS B3 96 vfr 98 +f OMERI03G23740.1 702 IFG 704 875 PP | |||||||
4 | B3 | 47.1 | 4.3e-15 | 840 | 918 | 17 | 99 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++a+ + ke + +t +++g+ Wev + ++k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k OMERI03G23740.1 840 DICREYADVYlP-FKELN--MT-LQRHGKNWEVLC-HTKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 918 555666655531.22232..33.348*********.677777789*************************999999***99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-24 | 53 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-25 | 53 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.069 | 56 | 149 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.43E-21 | 58 | 147 | No hit | No description |
SMART | SM01019 | 9.2E-14 | 59 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-18 | 59 | 147 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-25 | 327 | 438 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-23 | 329 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.788 | 332 | 425 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.55E-21 | 333 | 423 | No hit | No description |
SMART | SM01019 | 1.1E-11 | 335 | 425 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-18 | 335 | 423 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-6 | 513 | 579 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-21 | 610 | 708 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.183 | 613 | 706 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-12 | 616 | 706 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.27E-21 | 616 | 703 | No hit | No description |
Pfam | PF02362 | 1.3E-15 | 616 | 703 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 626 | 716 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 810 | 916 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-5 | 830 | 919 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-14 | 835 | 918 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-16 | 837 | 917 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-12 | 841 | 917 | No hit | No description |
PROSITE profile | PS50863 | 11.829 | 853 | 919 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MAPFPTSPSL PSFFPSAHLL LSLALFFLCM QSNHRMSKSG CERCRGRGFW DTDDQDTYFF 60 KVMIGGFRRQ MTIPYKFAEN FRDQIQGTIK LKACNGNTCS VLVDKCSNKL VLTKGWAEFA 120 NSHDIKMGDF LVFRYIGNSQ FEVKIFDPSG CVKASSHNAV NIGQHAQNMQ GDPIEILSCS 180 DEHLRAQSLT TERQNQPEKD VIENCNKKMK TEHASSSEDD QETPTAEVHR MKVEEMVRDI 240 HSNHPVFVAV MKKSNVTRQP CYVVASEVLY QQTQIENAFK GVEKIHKRQR AAGAPLALLI 300 ALFFPPHFRK MKRCGQKMRK LNTRSTARDD QEKYFFKVMI GDFHKRMTIP DKFARHFKGV 360 ISKTIKLEPR SGYTFDVQVT KKLNILVFGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL 420 IFDPSGCEKS TSCSMENAID HVGQGWKEHN DISTSYHDQP KGNKHWMQKD SSSKGNKIGN 480 TRSSNTPSKF SGCILPRGTC LPEVQEKKMK EKIQSIHSKT PMYGNVMTKC NVSGSPCVLE 540 ITQLYDDAYL PYNNGQELML RHRDKSWKVR FYRFKNKSRK LTQASLLYKM RRPGARCREG 600 HAHFNGNHID GQDKNFFKVM IGRFRERMII PNEFLQYFRG KIPRTIKLQL RDGCTYDVQV 660 TKNLGKISLQ SGWKAFVTAH DLQLGDFLVF SYDEISELKV LIFGPSGCEK VHPCPTTKGA 720 THSGEKWEEP LRISSNSYDL PVKSPQSVSK SEKQWDSSGQ ENNTANIEEV ALQGDDLQVH 780 PVLNCILPKH TRLTDMQKQQ LERKVRAIHS EIPIYGCILR KSRVHGKSQT VEPFSLCNQD 840 ICREYADVYL PFKELNMTLQ RHGKNWEVLC HTKDTRTKRL STGWSRFAQE NNLQVGDICL 900 FELLKNKEYS MNVHIIPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0E0D3S2 | 0.0 | A0A0E0D3S2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G23140.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-25 | B3 family protein |