PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 919aa    MW: 105404 Da    PI: 9.544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22.1e-2059148199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     +++ ++++p kfae++  +   + t++l+  +g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   v
  OMERI03G23740.1  59 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKACNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYIGNSQF--EV 143
                      56666..445555.6********888655..4459***************..**************************************..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+ 
  OMERI03G23740.1 144 KIFDP 148
                      99986 PP

2B365.48.7e-213434241299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa++++g+   skt++le +sg +++v++  +kk +  v+++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  OMERI03G23740.1 343 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVFGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 424
                      4568********999999..899****************..*******************************976..88889999985 PP

3B355.51e-17617704298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++d+    el+v 
  OMERI03G23740.1 617 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQLGDFLVFSYDE--ISELKVL 701
                      5555..44444.57********555666..66789999999********..*******************************975..4445888 PP

                      EE- CS
               B3  96 vfr 98 
                      +f 
  OMERI03G23740.1 702 IFG 704
                      875 PP

4B347.14.3e-158409181799
                      E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + +++a+ +    ke +  +t  +++g+ Wev + ++k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  OMERI03G23740.1 840 DICREYADVYlP-FKELN--MT-LQRHGKNWEVLC-HTKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 918
                      555666655531.22232..33.348*********.677777789*************************999999***99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2453151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2553151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06956149IPR003340B3 DNA binding domain
CDDcd100172.43E-2158147No hitNo description
SMARTSM010199.2E-1459149IPR003340B3 DNA binding domain
PfamPF023622.4E-1859147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-25327438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-23329427IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788332425IPR003340B3 DNA binding domain
CDDcd100176.55E-21333423No hitNo description
SMARTSM010191.1E-11335425IPR003340B3 DNA binding domain
PfamPF023622.2E-18335423IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-6513579IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21610708IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183613706IPR003340B3 DNA binding domain
SMARTSM010195.6E-12616706IPR003340B3 DNA binding domain
CDDcd100179.27E-21616703No hitNo description
PfamPF023621.3E-15616703IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-21626716IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19810916IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-5830919IPR003340B3 DNA binding domain
PfamPF023629.9E-14835918IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-16837917IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-12841917No hitNo description
PROSITE profilePS5086311.829853919IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MAPFPTSPSL PSFFPSAHLL LSLALFFLCM QSNHRMSKSG CERCRGRGFW DTDDQDTYFF  60
KVMIGGFRRQ MTIPYKFAEN FRDQIQGTIK LKACNGNTCS VLVDKCSNKL VLTKGWAEFA  120
NSHDIKMGDF LVFRYIGNSQ FEVKIFDPSG CVKASSHNAV NIGQHAQNMQ GDPIEILSCS  180
DEHLRAQSLT TERQNQPEKD VIENCNKKMK TEHASSSEDD QETPTAEVHR MKVEEMVRDI  240
HSNHPVFVAV MKKSNVTRQP CYVVASEVLY QQTQIENAFK GVEKIHKRQR AAGAPLALLI  300
ALFFPPHFRK MKRCGQKMRK LNTRSTARDD QEKYFFKVMI GDFHKRMTIP DKFARHFKGV  360
ISKTIKLEPR SGYTFDVQVT KKLNILVFGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL  420
IFDPSGCEKS TSCSMENAID HVGQGWKEHN DISTSYHDQP KGNKHWMQKD SSSKGNKIGN  480
TRSSNTPSKF SGCILPRGTC LPEVQEKKMK EKIQSIHSKT PMYGNVMTKC NVSGSPCVLE  540
ITQLYDDAYL PYNNGQELML RHRDKSWKVR FYRFKNKSRK LTQASLLYKM RRPGARCREG  600
HAHFNGNHID GQDKNFFKVM IGRFRERMII PNEFLQYFRG KIPRTIKLQL RDGCTYDVQV  660
TKNLGKISLQ SGWKAFVTAH DLQLGDFLVF SYDEISELKV LIFGPSGCEK VHPCPTTKGA  720
THSGEKWEEP LRISSNSYDL PVKSPQSVSK SEKQWDSSGQ ENNTANIEEV ALQGDDLQVH  780
PVLNCILPKH TRLTDMQKQQ LERKVRAIHS EIPIYGCILR KSRVHGKSQT VEPFSLCNQD  840
ICREYADVYL PFKELNMTLQ RHGKNWEVLC HTKDTRTKRL STGWSRFAQE NNLQVGDICL  900
FELLKNKEYS MNVHIIPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0D3S20.0A0A0E0D3S2_9ORYZ; Uncharacterized protein
STRINGOMERI03G23140.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-25B3 family protein