PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 520aa    MW: 59122.9 Da    PI: 8.4106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1735116997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ le+++g ++ vk+  +k+ ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  OMERI03G23710.1  35 ANF-GHSMTIPNKFLDHFGGT--LSRTIELESPKGVVYIVKV--TKHMNETILQCGWEAFVDAHHIEENDSLLFHHIENSRF--EVLIL 116
                      334.456********888877..899****************..*********************************99999..66665 PP
2B363.92.5e-20249348198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   ++es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  OMERI03G23710.1 249 FVAIMKHSNVNSRrACLVIPKRYASAHF--PHESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 340
                      6677888888887788***********7..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  OMERI03G23710.1 341 GATVHLLR 348
                      66777666 PP
3B3581.7e-18424516899
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      s+v++    ++++ ++fa+++  ++ +++tltl    +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v++
  OMERI03G23710.1 424 SNVGTDglYIIIFGRQFATRYL-PE-GEQTLTLLMpGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNRLQIEDICLFQLMNDeSKLTMTVHI 513
                      555555112346689***9993.33.3345666553788*******..77777779**************************998********* PP

                      E-S CS
               B3  97 frk 99 
                      +r+
  OMERI03G23710.1 514 IRR 516
                      *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2125124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1926121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.09726119IPR003340B3 DNA binding domain
CDDcd100179.50E-1627117No hitNo description
SMARTSM010196.1E-829119IPR003340B3 DNA binding domain
PfamPF023625.0E-1634115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-21241334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24243336IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-22247348No hitNo description
SMARTSM010191.3E-7249351IPR003340B3 DNA binding domain
PfamPF023623.7E-20249349IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253250350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-22409517IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19410517IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-15415515No hitNo description
PROSITE profilePS5086311.857417517IPR003340B3 DNA binding domain
SMARTSM010199.9E-7417517IPR003340B3 DNA binding domain
PfamPF023624.1E-18421517IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAGQGSQKKK SCDWPKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE  60
LESPKGVVYI VKVTKHMNET ILQCGWEAFV DAHHIEENDS LLFHHIENSR FEVLILDSDG  120
CEKVFTCAGI KRTSSVQERN AAPVDISRST HDETTQSSGS KKIVRCQKAS SDSQRGKTAK  180
LAETSSSGES GEEGTDSSTS EDESSYELDD PKMSPGHNYV LSHWTSLSEA QEEKVDMLVQ  240
DIQPEIPVFV AIMKHSNVNS RRACLVIPKR YASAHFPHES QTITLQRQGK NKKWYPMFYI  300
RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF HLTKFTGGEF GATVHLLRET KSGSLGSFHT  360
SHKRFDLRDG RTRPKVTDAR RVSSRPYLTA DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI  420
MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ TLTLLMPGKS NAWQVKMRPR SGDAQMITTG  480
WRHFVHDNRL QIEDICLFQL MNDESKLTMT VHIIRRNEKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0E0D3R80.0A0A0E0D3R8_9ORYZ; Uncharacterized protein
STRINGOMERI03G23110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]