PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G19370.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 315aa    MW: 34555.6 Da    PI: 9.3289
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G19370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.9e-32163219158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rakle+++k   k+r+pylheSRh+hA++R+RgsgGrF
  OMERI03G19370.1 163 EEPIFVNAKQYNAILRRRQTRAKLEAQNKA-VKGRRPYLHESRHRHAMKRARGSGGRF 219
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.1E-35161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.193162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-27164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-23165187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-23196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIMLLQEMEN HPVQCMAKTN YDFLSRNNYP MKQLVQRNSD GDLSPTKSGQ SHQEASAVSD  60
SSLNGQHTSP QSVFVPSDIN NNDSCGERDH GTKSVLSLGN TEAAFPPSKF DYNQPFACVS  120
YPYGTDPYYG GVLTGYTSHA FVHPQITGAA NSRMPLPVDP SVEEPIFVNA KQYNAILRRR  180
QTRAKLEAQN KAVKGRRPYL HESRHRHAMK RARGSGGRFL TKKELLEQQQ QQQKPPPASA  240
QSPTGKARTS GGAIVLGKNL CPENSTSCSP STPTGSEISS ISFGGGMLAH QEHISFASTD  300
CHPTMNQNHR VPVMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-23162224163NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621350.0AK062135.1 Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence.
GenBankEU8470110.0EU847011.1 Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631980.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879587.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879588.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A0E0D2330.0A0A0E0D233_9ORYZ; Uncharacterized protein
STRINGOGLUM03G21930.20.0(Oryza glumipatula)
STRINGORUFI03G21850.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-36nuclear factor Y, subunit A6