PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G19290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 262aa    MW: 27296.8 Da    PI: 4.1433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G19290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77e-108381547
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +  +G + W++Ia +++ gRt++++k++w++ 
  OMERI03G19290.1  8 WHDAYGCR-WSLIAGRLP-GRTDNEIKNYWNST 38
                     67789999.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.343143IPR017930Myb domain
SuperFamilySSF466891.06E-8545IPR009057Homeodomain-like
PfamPF002496.6E-8538IPR001005SANT/Myb domain
CDDcd001671.44E-6539No hitNo description
Gene3DG3DSA:1.10.10.603.2E-13639IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASNLKTWHD AYGCRWSLIA GRLPGRTDNE IKNYWNSTLS KRIAMQRTAA ATSMPAEATT  60
SSADAAGAAA RRRRSPEPRT IAVSPIRTKA LRCNNNNNNN RVVAAAGACS HGGRPPESGA  120
PGEAAADNVA TPQAGQHQLQ ELAGGEDDDD LPVPAVCIDL DLDDIELGGL DGFLISPWRG  180
GGHDEDNAAA AGAVPNLPMP IGYELGGGGG GEAGAVDLEA LLGQLEAGED GDGDHQQQQQ  240
EVPSSLGDED DDDYLELAPW LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1134330.0AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence.
GenBankAK1106830.0AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629423.12e-97anthocyanin regulatory C1 protein
TrEMBLA0A0E0D2130.0A0A0E0D213_9ORYZ; Uncharacterized protein
STRINGOMERI03G19270.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2000155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-13MYB family protein