PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G16120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 26953 Da PI: 4.802 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.2 | 4.2e-11 | 180 | 240 | 1 | 70 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 +fYn +A + GFs+r + +k+ ++++ +r+f+Cs++g+++ ++++ +tr++C a+l++ k OMERI03G16120.1 180 QFYNIHAWDSGFSIRLGRLQKNPTTKNLNMREFQCSRSGTPRANQRS---------TTRCDCPARLRLLK 240 6***************************************9987665.........99******998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-8 | 180 | 239 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEELHPTRSF LQLMASMHEP ADQVALRIEA DLLKCDEDIP YRGDASPPEF PVVPADGSLV 60 GRTEMLLDSE GDPIVMDIAE QTEHTDYDSP IAESEPMQQS TPSGTVFEAL DAEQTGYSSA 120 TSASTKRRKR RWAGTDLLVN NPDFAGAIEQ AIRNASARAT AAICHPREGQ VFDTEGEAYQ 180 FYNIHAWDSG FSIRLGRLQK NPTTKNLNMR EFQCSRSGTP RANQRSTTRC DCPARLRLLK 240 TST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0D0T4 | 0.0 | A0A0E0D0T4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G16270.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 7e-10 | FAR1-related sequence 11 |