PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G13380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 175aa MW: 19004.8 Da PI: 9.2487 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.6 | 8.3e-11 | 27 | 79 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + rk +NR++A+rsR +K+++++ L+ ++++L eN+a++ + + + OMERI03G13380.1 27 RQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAGAGAALQRCR 79 4556888**********************************987766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 22 | 69 | No hit | No description |
SMART | SM00338 | 1.1E-10 | 23 | 87 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-7 | 24 | 71 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.714 | 25 | 68 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.09E-8 | 27 | 73 | No hit | No description |
CDD | cd14702 | 2.08E-14 | 28 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 45 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSVAPAPEGS ARRAAAAAAA AATKEERQRN RKRSNRLSAQ RSRMKKQQYV DGLAVEAEQL 60 RRENDAMRAG AGAALQRCRL VEQENRVLAA HARELCSGLQ LRASQLRLLG EVAGVPLDVP 120 DIADHLVQLY GGGLGMTTLS PPPPLLPLPP QIEMLFFQPD SVMDPVSMLQ GYENI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134769 | 0.0 | AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence. | |||
GenBank | AK109929 | 0.0 | AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631799.1 | 5e-90 | ocs element-binding factor 1 | ||||
TrEMBL | A0A0E0CZH7 | 1e-121 | A0A0E0CZH7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G13470.1 | 1e-122 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12504 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 5e-14 | basic leucine-zipper 44 |